Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0686 and Synpcc7942_0687 overlap by 11 nucleotides Synpcc7942_0687 and Synpcc7942_0688 overlap by 26 nucleotides Synpcc7942_0688 and Synpcc7942_0689 overlap by 10 nucleotides
Synpcc7942_0686: Synpcc7942_0686 - FO synthase subunit 2, at 680,978 to 682,138
_0686
Synpcc7942_0687: Synpcc7942_0687 - hypothetical protein, at 682,128 to 683,747
_0687
Synpcc7942_0688: Synpcc7942_0688 - transcriptional regulator, ArsR family, at 683,722 to 684,060
_0688
Synpcc7942_0689: Synpcc7942_0689 - hypothetical protein, at 684,051 to 684,884
_0689
Position (kb) 682
683
684 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 681.138 kb on - strand, within Synpcc7942_0686 at 681.232 kb on + strand, within Synpcc7942_0686 at 681.235 kb on - strand, within Synpcc7942_0686 at 681.325 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.400 kb on - strand, within Synpcc7942_0686 at 681.482 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand at 681.490 kb on - strand, within Synpcc7942_0686 at 681.492 kb on - strand, within Synpcc7942_0686 at 681.525 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.593 kb on + strand, within Synpcc7942_0686 at 681.615 kb on + strand, within Synpcc7942_0686 at 681.615 kb on - strand, within Synpcc7942_0686 at 681.615 kb on - strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.660 kb on - strand, within Synpcc7942_0686 at 681.660 kb on - strand, within Synpcc7942_0686 at 681.671 kb on - strand, within Synpcc7942_0686 at 681.680 kb on - strand, within Synpcc7942_0686 at 681.686 kb on - strand, within Synpcc7942_0686 at 681.760 kb on + strand, within Synpcc7942_0686 at 681.767 kb on - strand, within Synpcc7942_0686 at 681.814 kb on + strand, within Synpcc7942_0686 at 681.819 kb on + strand, within Synpcc7942_0686 at 681.822 kb on - strand, within Synpcc7942_0686 at 681.848 kb on - strand, within Synpcc7942_0686 at 681.850 kb on + strand, within Synpcc7942_0686 at 681.865 kb on + strand, within Synpcc7942_0686 at 681.869 kb on + strand, within Synpcc7942_0686 at 681.870 kb on + strand, within Synpcc7942_0686 at 681.882 kb on - strand, within Synpcc7942_0686 at 681.883 kb on - strand, within Synpcc7942_0686 at 681.904 kb on + strand, within Synpcc7942_0686 at 681.925 kb on - strand, within Synpcc7942_0686 at 681.926 kb on - strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.936 kb on - strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.946 kb on - strand, within Synpcc7942_0686 at 682.021 kb on - strand at 682.026 kb on - strand at 682.026 kb on - strand at 682.027 kb on + strand at 682.028 kb on + strand at 682.051 kb on - strand at 682.053 kb on - strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.085 kb on - strand at 682.085 kb on - strand at 682.107 kb on - strand at 682.113 kb on - strand at 682.124 kb on + strand at 682.124 kb on + strand at 682.127 kb on - strand at 682.141 kb on - strand at 682.153 kb on + strand at 682.153 kb on + strand at 682.153 kb on + strand at 682.161 kb on - strand at 682.221 kb on - strand at 682.222 kb on - strand at 682.299 kb on + strand, within Synpcc7942_0687 at 682.311 kb on + strand, within Synpcc7942_0687 at 682.326 kb on + strand, within Synpcc7942_0687 at 682.349 kb on + strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.354 kb on + strand, within Synpcc7942_0687 at 682.354 kb on + strand, within Synpcc7942_0687 at 682.357 kb on - strand, within Synpcc7942_0687 at 682.357 kb on - strand, within Synpcc7942_0687 at 682.367 kb on - strand, within Synpcc7942_0687 at 682.367 kb on - strand, within Synpcc7942_0687 at 682.384 kb on + strand, within Synpcc7942_0687 at 682.391 kb on + strand, within Synpcc7942_0687 at 682.395 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.445 kb on - strand, within Synpcc7942_0687 at 682.475 kb on + strand, within Synpcc7942_0687 at 682.477 kb on - strand, within Synpcc7942_0687 at 682.486 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.506 kb on - strand, within Synpcc7942_0687 at 682.507 kb on - strand, within Synpcc7942_0687 at 682.519 kb on - strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.560 kb on - strand, within Synpcc7942_0687 at 682.619 kb on - strand, within Synpcc7942_0687 at 682.623 kb on + strand, within Synpcc7942_0687 at 682.626 kb on - strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.654 kb on + strand, within Synpcc7942_0687 at 682.662 kb on - strand, within Synpcc7942_0687 at 682.687 kb on - strand, within Synpcc7942_0687 at 682.713 kb on - strand, within Synpcc7942_0687 at 682.735 kb on + strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.753 kb on - strand, within Synpcc7942_0687 at 682.754 kb on + strand, within Synpcc7942_0687 at 682.771 kb on + strand, within Synpcc7942_0687 at 682.787 kb on + strand, within Synpcc7942_0687 at 682.789 kb on - strand, within Synpcc7942_0687 at 682.795 kb on - strand, within Synpcc7942_0687 at 682.803 kb on + strand, within Synpcc7942_0687 at 682.825 kb on + strand, within Synpcc7942_0687 at 682.830 kb on + strand, within Synpcc7942_0687 at 682.838 kb on - strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.922 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 683.097 kb on + strand, within Synpcc7942_0687 at 683.105 kb on + strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.121 kb on - strand, within Synpcc7942_0687 at 683.189 kb on + strand, within Synpcc7942_0687 at 683.236 kb on + strand, within Synpcc7942_0687 at 683.237 kb on + strand, within Synpcc7942_0687 at 683.315 kb on + strand, within Synpcc7942_0687 at 683.426 kb on - strand, within Synpcc7942_0687 at 683.455 kb on + strand, within Synpcc7942_0687 at 683.460 kb on - strand, within Synpcc7942_0687 at 683.473 kb on - strand, within Synpcc7942_0687 at 683.522 kb on + strand, within Synpcc7942_0687 at 683.527 kb on + strand, within Synpcc7942_0687 at 683.535 kb on - strand, within Synpcc7942_0687 at 683.551 kb on + strand, within Synpcc7942_0687 at 683.602 kb on - strand at 683.654 kb on + strand at 683.661 kb on - strand at 683.663 kb on + strand at 683.665 kb on + strand at 683.671 kb on + strand at 683.673 kb on - strand at 683.686 kb on + strand at 683.730 kb on + strand at 683.798 kb on - strand, within Synpcc7942_0688 at 683.827 kb on + strand, within Synpcc7942_0688 at 683.845 kb on - strand, within Synpcc7942_0688 at 683.852 kb on + strand, within Synpcc7942_0688 at 683.886 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.923 kb on - strand, within Synpcc7942_0688 at 683.926 kb on + strand, within Synpcc7942_0688 at 683.940 kb on - strand, within Synpcc7942_0688 at 683.944 kb on + strand, within Synpcc7942_0688 at 683.975 kb on + strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 684.001 kb on - strand, within Synpcc7942_0688 at 684.020 kb on + strand, within Synpcc7942_0688 at 684.024 kb on + strand, within Synpcc7942_0688 at 684.028 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.108 kb on - strand at 684.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 681,138 - Synpcc7942_0686 0.14 +0.4 681,232 + Synpcc7942_0686 0.22 +1.9 681,235 - Synpcc7942_0686 0.22 -0.2 681,325 + Synpcc7942_0686 0.30 +0.3 681,387 + Synpcc7942_0686 0.35 +2.9 681,387 + Synpcc7942_0686 0.35 +1.7 681,387 + Synpcc7942_0686 0.35 +0.3 681,395 - Synpcc7942_0686 0.36 +3.3 681,395 - Synpcc7942_0686 0.36 +2.5 681,395 - Synpcc7942_0686 0.36 +0.6 681,395 - Synpcc7942_0686 0.36 -0.5 681,400 - Synpcc7942_0686 0.36 +2.2 681,482 + Synpcc7942_0686 0.43 -0.6 681,484 + Synpcc7942_0686 0.44 +1.8 681,484 + +4.1 681,490 - Synpcc7942_0686 0.44 +3.1 681,492 - Synpcc7942_0686 0.44 +2.1 681,525 + Synpcc7942_0686 0.47 +2.3 681,539 + Synpcc7942_0686 0.48 +1.4 681,539 + Synpcc7942_0686 0.48 +4.1 681,539 + Synpcc7942_0686 0.48 +2.2 681,593 + Synpcc7942_0686 0.53 +2.2 681,615 + Synpcc7942_0686 0.55 +2.5 681,615 - Synpcc7942_0686 0.55 +3.7 681,615 - Synpcc7942_0686 0.55 +3.7 681,652 + Synpcc7942_0686 0.58 +3.6 681,652 + Synpcc7942_0686 0.58 +0.6 681,652 + Synpcc7942_0686 0.58 +0.8 681,652 + Synpcc7942_0686 0.58 +3.4 681,652 + Synpcc7942_0686 0.58 +7.1 681,660 - Synpcc7942_0686 0.59 +1.8 681,660 - Synpcc7942_0686 0.59 +3.4 681,671 - Synpcc7942_0686 0.60 +2.9 681,680 - Synpcc7942_0686 0.60 +3.7 681,686 - Synpcc7942_0686 0.61 +2.8 681,760 + Synpcc7942_0686 0.67 +4.3 681,767 - Synpcc7942_0686 0.68 +5.0 681,814 + Synpcc7942_0686 0.72 +3.2 681,819 + Synpcc7942_0686 0.72 +4.0 681,822 - Synpcc7942_0686 0.73 +2.5 681,848 - Synpcc7942_0686 0.75 +1.0 681,850 + Synpcc7942_0686 0.75 +5.3 681,865 + Synpcc7942_0686 0.76 +0.5 681,869 + Synpcc7942_0686 0.77 +3.4 681,870 + Synpcc7942_0686 0.77 +4.3 681,882 - Synpcc7942_0686 0.78 +1.5 681,883 - Synpcc7942_0686 0.78 +4.7 681,904 + Synpcc7942_0686 0.80 +2.7 681,925 - Synpcc7942_0686 0.82 +0.7 681,926 - Synpcc7942_0686 0.82 +3.8 681,928 + Synpcc7942_0686 0.82 +4.9 681,928 + Synpcc7942_0686 0.82 +3.7 681,928 + Synpcc7942_0686 0.82 +2.7 681,936 - Synpcc7942_0686 0.83 +2.4 681,938 + Synpcc7942_0686 0.83 +3.7 681,938 + Synpcc7942_0686 0.83 +4.4 681,938 + Synpcc7942_0686 0.83 +3.6 681,946 - Synpcc7942_0686 0.83 +0.2 682,021 - +1.9 682,026 - +2.6 682,026 - +4.9 682,027 + +1.9 682,028 + +2.5 682,051 - +5.0 682,053 - +6.7 682,077 + +1.6 682,077 + +0.2 682,077 + +1.6 682,077 + -1.7 682,085 - +5.9 682,085 - +1.4 682,107 - +2.4 682,113 - +2.3 682,124 + +3.5 682,124 + -0.1 682,127 - -2.2 682,141 - +0.8 682,153 + -2.4 682,153 + -1.7 682,153 + -1.9 682,161 - -3.5 682,221 - -2.3 682,222 - +0.3 682,299 + Synpcc7942_0687 0.11 -1.3 682,311 + Synpcc7942_0687 0.11 -1.1 682,326 + Synpcc7942_0687 0.12 -3.8 682,349 + Synpcc7942_0687 0.14 +0.3 682,352 - Synpcc7942_0687 0.14 -5.0 682,352 - Synpcc7942_0687 0.14 +0.0 682,352 - Synpcc7942_0687 0.14 -0.4 682,354 + Synpcc7942_0687 0.14 -2.2 682,354 + Synpcc7942_0687 0.14 -3.0 682,357 - Synpcc7942_0687 0.14 -2.0 682,357 - Synpcc7942_0687 0.14 +0.0 682,367 - Synpcc7942_0687 0.15 -1.0 682,367 - Synpcc7942_0687 0.15 -2.1 682,384 + Synpcc7942_0687 0.16 -1.2 682,391 + Synpcc7942_0687 0.16 +1.0 682,395 + Synpcc7942_0687 0.16 -1.8 682,405 + Synpcc7942_0687 0.17 -2.5 682,405 + Synpcc7942_0687 0.17 -5.0 682,405 + Synpcc7942_0687 0.17 -1.6 682,445 - Synpcc7942_0687 0.20 -2.1 682,475 + Synpcc7942_0687 0.21 -2.1 682,477 - Synpcc7942_0687 0.22 -2.1 682,486 + Synpcc7942_0687 0.22 -3.2 682,498 + Synpcc7942_0687 0.23 -1.2 682,498 + Synpcc7942_0687 0.23 -0.7 682,498 + Synpcc7942_0687 0.23 -3.3 682,498 + Synpcc7942_0687 0.23 -3.8 682,506 - Synpcc7942_0687 0.23 -2.5 682,507 - Synpcc7942_0687 0.23 -1.8 682,519 - Synpcc7942_0687 0.24 -0.2 682,552 + Synpcc7942_0687 0.26 -2.1 682,552 + Synpcc7942_0687 0.26 +0.0 682,552 + Synpcc7942_0687 0.26 -2.7 682,560 - Synpcc7942_0687 0.27 -2.2 682,619 - Synpcc7942_0687 0.30 +0.0 682,623 + Synpcc7942_0687 0.31 -4.0 682,626 - Synpcc7942_0687 0.31 +0.0 682,628 + Synpcc7942_0687 0.31 -2.0 682,628 + Synpcc7942_0687 0.31 -3.4 682,628 + Synpcc7942_0687 0.31 -0.2 682,628 + Synpcc7942_0687 0.31 -0.8 682,628 + Synpcc7942_0687 0.31 -2.7 682,628 + Synpcc7942_0687 0.31 -1.1 682,628 + Synpcc7942_0687 0.31 -2.2 682,628 + Synpcc7942_0687 0.31 -0.6 682,636 - Synpcc7942_0687 0.31 -1.5 682,636 - Synpcc7942_0687 0.31 -2.1 682,636 - Synpcc7942_0687 0.31 -0.8 682,636 - Synpcc7942_0687 0.31 -2.6 682,636 - Synpcc7942_0687 0.31 -1.7 682,636 - Synpcc7942_0687 0.31 -2.1 682,636 - Synpcc7942_0687 0.31 -1.9 682,636 - Synpcc7942_0687 0.31 -1.2 682,636 - Synpcc7942_0687 0.31 -1.1 682,654 + Synpcc7942_0687 0.32 -2.6 682,662 - Synpcc7942_0687 0.33 -2.2 682,687 - Synpcc7942_0687 0.35 -0.4 682,713 - Synpcc7942_0687 0.36 -1.9 682,735 + Synpcc7942_0687 0.37 +0.4 682,743 - Synpcc7942_0687 0.38 -1.8 682,743 - Synpcc7942_0687 0.38 -2.6 682,743 - Synpcc7942_0687 0.38 -3.8 682,753 - Synpcc7942_0687 0.39 +1.0 682,754 + Synpcc7942_0687 0.39 -2.7 682,771 + Synpcc7942_0687 0.40 -1.1 682,787 + Synpcc7942_0687 0.41 -4.4 682,789 - Synpcc7942_0687 0.41 -1.7 682,795 - Synpcc7942_0687 0.41 -1.3 682,803 + Synpcc7942_0687 0.42 +0.3 682,825 + Synpcc7942_0687 0.43 -2.6 682,830 + Synpcc7942_0687 0.43 -3.5 682,838 - Synpcc7942_0687 0.44 -2.4 682,916 + Synpcc7942_0687 0.49 -1.8 682,916 + Synpcc7942_0687 0.49 +0.6 682,922 - Synpcc7942_0687 0.49 -3.5 682,924 - Synpcc7942_0687 0.49 -2.4 682,924 - Synpcc7942_0687 0.49 -1.5 682,924 - Synpcc7942_0687 0.49 -1.2 683,097 + Synpcc7942_0687 0.60 -1.8 683,105 + Synpcc7942_0687 0.60 -0.8 683,116 - Synpcc7942_0687 0.61 -1.6 683,116 - Synpcc7942_0687 0.61 -2.3 683,121 - Synpcc7942_0687 0.61 -3.2 683,189 + Synpcc7942_0687 0.65 -0.8 683,236 + Synpcc7942_0687 0.68 -3.2 683,237 + Synpcc7942_0687 0.68 -1.3 683,315 + Synpcc7942_0687 0.73 -0.1 683,426 - Synpcc7942_0687 0.80 -4.2 683,455 + Synpcc7942_0687 0.82 -2.0 683,460 - Synpcc7942_0687 0.82 -3.6 683,473 - Synpcc7942_0687 0.83 -1.2 683,522 + Synpcc7942_0687 0.86 -3.5 683,527 + Synpcc7942_0687 0.86 -1.2 683,535 - Synpcc7942_0687 0.87 -0.2 683,551 + Synpcc7942_0687 0.88 -1.8 683,602 - -2.4 683,654 + -3.1 683,661 - -1.9 683,663 + -0.4 683,665 + +1.0 683,671 + -2.3 683,673 - -3.5 683,686 + -1.8 683,730 + -2.9 683,798 - Synpcc7942_0688 0.22 -0.5 683,827 + Synpcc7942_0688 0.31 -0.5 683,845 - Synpcc7942_0688 0.36 -0.1 683,852 + Synpcc7942_0688 0.38 -3.3 683,886 + Synpcc7942_0688 0.48 +3.3 683,897 + Synpcc7942_0688 0.52 +0.1 683,897 + Synpcc7942_0688 0.52 +1.0 683,897 + Synpcc7942_0688 0.52 -0.6 683,923 - Synpcc7942_0688 0.59 +0.0 683,926 + Synpcc7942_0688 0.60 +2.3 683,940 - Synpcc7942_0688 0.64 +2.4 683,944 + Synpcc7942_0688 0.65 +0.3 683,975 + Synpcc7942_0688 0.75 +0.5 683,983 - Synpcc7942_0688 0.77 -1.0 683,983 - Synpcc7942_0688 0.77 -3.1 683,983 - Synpcc7942_0688 0.77 -1.8 683,983 - Synpcc7942_0688 0.77 -2.2 684,001 - Synpcc7942_0688 0.82 -2.4 684,020 + Synpcc7942_0688 0.88 +0.7 684,024 + Synpcc7942_0688 0.89 +0.3 684,028 - +1.8 684,103 - -1.8 684,103 - -4.2 684,103 - -3.4 684,103 - -3.5 684,108 - -1.9 684,108 - -3.2
Or see this region's nucleotide sequence