Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0683 and fabG are separated by 57 nucleotides fabG and groEL are separated by 106 nucleotides groEL and Synpcc7942_0686 are separated by 429 nucleotides
Synpcc7942_0683: Synpcc7942_0683 - potassium channel protein, at 676,942 to 677,967
_0683
Synpcc7942_0684: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase, at 678,025 to 678,774
fabG
Synpcc7942_0685: groEL - chaperonin GroEL, at 678,881 to 680,548
groEL
Synpcc7942_0686: Synpcc7942_0686 - FO synthase subunit 2, at 680,978 to 682,138
_0686
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 677.899 kb on + strand at 677.899 kb on - strand at 677.908 kb on + strand at 677.919 kb on + strand at 677.919 kb on + strand at 677.927 kb on - strand at 678.013 kb on - strand at 678.030 kb on - strand at 678.030 kb on - strand at 678.768 kb on + strand at 678.768 kb on + strand at 678.768 kb on + strand at 678.776 kb on - strand at 678.806 kb on + strand at 678.806 kb on + strand at 678.812 kb on - strand at 678.814 kb on - strand at 678.829 kb on - strand at 678.854 kb on - strand at 678.857 kb on + strand at 678.859 kb on + strand at 678.867 kb on + strand at 678.974 kb on - strand at 678.982 kb on + strand at 679.006 kb on + strand at 679.029 kb on + strand at 679.078 kb on + strand, within groEL at 679.088 kb on - strand, within groEL at 679.095 kb on - strand, within groEL at 679.097 kb on + strand, within groEL at 679.097 kb on + strand, within groEL at 679.105 kb on - strand, within groEL at 679.124 kb on - strand, within groEL at 679.152 kb on + strand, within groEL at 679.157 kb on + strand at 679.162 kb on + strand, within groEL at 679.165 kb on - strand, within groEL at 679.184 kb on + strand, within groEL at 679.228 kb on - strand, within groEL at 679.280 kb on + strand, within groEL at 679.282 kb on - strand, within groEL at 679.373 kb on - strand, within groEL at 679.375 kb on + strand, within groEL at 679.375 kb on + strand, within groEL at 679.375 kb on + strand, within groEL at 679.383 kb on - strand, within groEL at 679.404 kb on + strand, within groEL at 679.474 kb on + strand, within groEL at 679.474 kb on + strand, within groEL at 679.511 kb on + strand, within groEL at 679.511 kb on + strand, within groEL at 679.600 kb on - strand, within groEL at 679.616 kb on + strand, within groEL at 679.657 kb on - strand, within groEL at 679.685 kb on + strand, within groEL at 679.687 kb on + strand, within groEL at 679.687 kb on + strand, within groEL at 679.693 kb on - strand, within groEL at 679.693 kb on - strand, within groEL at 679.693 kb on - strand, within groEL at 679.695 kb on - strand, within groEL at 679.695 kb on - strand, within groEL at 679.711 kb on - strand, within groEL at 679.716 kb on + strand, within groEL at 679.716 kb on + strand, within groEL at 679.729 kb on + strand, within groEL at 679.729 kb on + strand, within groEL at 679.737 kb on - strand, within groEL at 679.737 kb on - strand, within groEL at 679.742 kb on + strand, within groEL at 679.770 kb on - strand, within groEL at 679.794 kb on + strand, within groEL at 679.808 kb on - strand, within groEL at 679.824 kb on - strand, within groEL at 679.843 kb on - strand, within groEL at 679.843 kb on - strand, within groEL at 679.843 kb on - strand, within groEL at 679.869 kb on - strand, within groEL at 679.891 kb on - strand, within groEL at 679.916 kb on + strand at 679.924 kb on - strand, within groEL at 680.019 kb on - strand, within groEL at 680.034 kb on + strand, within groEL at 680.067 kb on + strand, within groEL at 680.079 kb on + strand, within groEL at 680.106 kb on + strand, within groEL at 680.116 kb on - strand, within groEL at 680.130 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.143 kb on + strand, within groEL at 680.150 kb on + strand, within groEL at 680.151 kb on - strand, within groEL at 680.158 kb on - strand, within groEL at 680.176 kb on + strand, within groEL at 680.239 kb on - strand, within groEL at 680.242 kb on - strand, within groEL at 680.261 kb on + strand, within groEL at 680.266 kb on + strand, within groEL at 680.267 kb on - strand, within groEL at 680.269 kb on - strand at 680.276 kb on - strand, within groEL at 680.336 kb on + strand, within groEL at 680.338 kb on - strand, within groEL at 680.338 kb on - strand, within groEL at 680.371 kb on + strand, within groEL at 680.379 kb on - strand, within groEL at 680.379 kb on - strand, within groEL at 680.497 kb on + strand at 680.540 kb on - strand at 680.545 kb on - strand at 680.550 kb on - strand at 680.572 kb on - strand at 680.572 kb on - strand at 680.594 kb on - strand at 680.652 kb on + strand at 680.679 kb on + strand at 680.686 kb on + strand at 680.705 kb on + strand at 680.712 kb on + strand at 680.814 kb on + strand at 680.817 kb on + strand at 680.822 kb on - strand at 680.826 kb on + strand at 680.826 kb on + strand at 680.834 kb on - strand at 680.870 kb on + strand at 680.870 kb on + strand at 680.878 kb on - strand at 680.932 kb on - strand at 680.963 kb on + strand at 680.968 kb on + strand at 681.094 kb on + strand, within Synpcc7942_0686 at 681.118 kb on - strand, within Synpcc7942_0686 at 681.120 kb on + strand, within Synpcc7942_0686 at 681.123 kb on + strand, within Synpcc7942_0686 at 681.138 kb on - strand, within Synpcc7942_0686 at 681.232 kb on + strand, within Synpcc7942_0686 at 681.235 kb on - strand, within Synpcc7942_0686 at 681.325 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.400 kb on - strand, within Synpcc7942_0686 at 681.482 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand at 681.490 kb on - strand, within Synpcc7942_0686 at 681.492 kb on - strand, within Synpcc7942_0686 at 681.525 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 677,899 + -2.5 677,899 - +1.1 677,908 + -0.9 677,919 + +1.9 677,919 + +0.5 677,927 - -2.7 678,013 - +0.1 678,030 - +0.3 678,030 - +2.6 678,768 + +1.6 678,768 + -2.4 678,768 + -1.3 678,776 - +0.0 678,806 + -0.2 678,806 + -2.8 678,812 - -3.0 678,814 - +1.7 678,829 - -2.3 678,854 - -2.3 678,857 + -2.6 678,859 + +2.0 678,867 + +0.0 678,974 - -2.1 678,982 + -3.1 679,006 + -1.6 679,029 + -1.6 679,078 + groEL Synpcc7942_0685 0.12 -2.2 679,088 - groEL Synpcc7942_0685 0.12 -1.4 679,095 - groEL Synpcc7942_0685 0.13 +1.0 679,097 + groEL Synpcc7942_0685 0.13 -2.6 679,097 + groEL Synpcc7942_0685 0.13 -1.2 679,105 - groEL Synpcc7942_0685 0.13 -0.6 679,124 - groEL Synpcc7942_0685 0.15 -1.1 679,152 + groEL Synpcc7942_0685 0.16 -0.2 679,157 + +0.3 679,162 + groEL Synpcc7942_0685 0.17 -3.4 679,165 - groEL Synpcc7942_0685 0.17 -1.0 679,184 + groEL Synpcc7942_0685 0.18 -3.8 679,228 - groEL Synpcc7942_0685 0.21 -3.8 679,280 + groEL Synpcc7942_0685 0.24 -4.7 679,282 - groEL Synpcc7942_0685 0.24 -2.2 679,373 - groEL Synpcc7942_0685 0.29 -3.4 679,375 + groEL Synpcc7942_0685 0.30 -2.8 679,375 + groEL Synpcc7942_0685 0.30 -1.2 679,375 + groEL Synpcc7942_0685 0.30 +0.3 679,383 - groEL Synpcc7942_0685 0.30 -1.3 679,404 + groEL Synpcc7942_0685 0.31 -2.3 679,474 + groEL Synpcc7942_0685 0.36 -1.3 679,474 + groEL Synpcc7942_0685 0.36 -4.3 679,511 + groEL Synpcc7942_0685 0.38 -4.1 679,511 + groEL Synpcc7942_0685 0.38 -1.8 679,600 - groEL Synpcc7942_0685 0.43 -2.9 679,616 + groEL Synpcc7942_0685 0.44 -3.4 679,657 - groEL Synpcc7942_0685 0.47 -5.9 679,685 + groEL Synpcc7942_0685 0.48 -2.8 679,687 + groEL Synpcc7942_0685 0.48 -3.3 679,687 + groEL Synpcc7942_0685 0.48 -0.4 679,693 - groEL Synpcc7942_0685 0.49 -2.5 679,693 - groEL Synpcc7942_0685 0.49 -2.6 679,693 - groEL Synpcc7942_0685 0.49 -1.6 679,695 - groEL Synpcc7942_0685 0.49 +0.3 679,695 - groEL Synpcc7942_0685 0.49 -1.0 679,711 - groEL Synpcc7942_0685 0.50 -3.0 679,716 + groEL Synpcc7942_0685 0.50 -1.1 679,716 + groEL Synpcc7942_0685 0.50 -2.1 679,729 + groEL Synpcc7942_0685 0.51 -0.6 679,729 + groEL Synpcc7942_0685 0.51 -3.5 679,737 - groEL Synpcc7942_0685 0.51 -2.3 679,737 - groEL Synpcc7942_0685 0.51 -1.5 679,742 + groEL Synpcc7942_0685 0.52 -0.3 679,770 - groEL Synpcc7942_0685 0.53 -1.5 679,794 + groEL Synpcc7942_0685 0.55 -0.4 679,808 - groEL Synpcc7942_0685 0.56 -4.2 679,824 - groEL Synpcc7942_0685 0.57 -1.1 679,843 - groEL Synpcc7942_0685 0.58 +0.0 679,843 - groEL Synpcc7942_0685 0.58 -1.3 679,843 - groEL Synpcc7942_0685 0.58 -4.2 679,869 - groEL Synpcc7942_0685 0.59 -1.9 679,891 - groEL Synpcc7942_0685 0.61 +2.2 679,916 + +0.6 679,924 - groEL Synpcc7942_0685 0.63 -1.0 680,019 - groEL Synpcc7942_0685 0.68 -1.0 680,034 + groEL Synpcc7942_0685 0.69 -1.6 680,067 + groEL Synpcc7942_0685 0.71 -1.6 680,079 + groEL Synpcc7942_0685 0.72 -1.6 680,106 + groEL Synpcc7942_0685 0.73 -3.2 680,116 - groEL Synpcc7942_0685 0.74 -5.2 680,130 + groEL Synpcc7942_0685 0.75 -0.7 680,132 + groEL Synpcc7942_0685 0.75 -1.4 680,132 + groEL Synpcc7942_0685 0.75 -4.0 680,132 + groEL Synpcc7942_0685 0.75 -2.0 680,143 + groEL Synpcc7942_0685 0.76 -3.8 680,150 + groEL Synpcc7942_0685 0.76 -2.3 680,151 - groEL Synpcc7942_0685 0.76 -2.5 680,158 - groEL Synpcc7942_0685 0.77 -1.0 680,176 + groEL Synpcc7942_0685 0.78 -5.1 680,239 - groEL Synpcc7942_0685 0.81 -5.4 680,242 - groEL Synpcc7942_0685 0.82 -3.1 680,261 + groEL Synpcc7942_0685 0.83 -2.0 680,266 + groEL Synpcc7942_0685 0.83 -0.2 680,267 - groEL Synpcc7942_0685 0.83 -3.0 680,269 - -0.2 680,276 - groEL Synpcc7942_0685 0.84 -4.8 680,336 + groEL Synpcc7942_0685 0.87 -2.1 680,338 - groEL Synpcc7942_0685 0.87 -3.3 680,338 - groEL Synpcc7942_0685 0.87 -1.9 680,371 + groEL Synpcc7942_0685 0.89 -2.1 680,379 - groEL Synpcc7942_0685 0.90 -2.1 680,379 - groEL Synpcc7942_0685 0.90 -1.1 680,497 + -2.7 680,540 - -1.7 680,545 - -2.7 680,550 - +1.2 680,572 - -1.3 680,572 - -0.9 680,594 - -0.9 680,652 + -2.6 680,679 + -2.0 680,686 + +0.0 680,705 + -0.9 680,712 + -3.3 680,814 + -1.1 680,817 + -0.4 680,822 - -3.2 680,826 + -0.9 680,826 + +3.1 680,834 - +0.8 680,870 + -1.8 680,870 + -2.2 680,878 - +1.6 680,932 - +0.2 680,963 + +0.1 680,968 + -1.7 681,094 + Synpcc7942_0686 0.10 -0.7 681,118 - Synpcc7942_0686 0.12 +5.4 681,120 + Synpcc7942_0686 0.12 +1.3 681,123 + Synpcc7942_0686 0.12 +0.4 681,138 - Synpcc7942_0686 0.14 +0.4 681,232 + Synpcc7942_0686 0.22 +1.9 681,235 - Synpcc7942_0686 0.22 -0.2 681,325 + Synpcc7942_0686 0.30 +0.3 681,387 + Synpcc7942_0686 0.35 +2.9 681,387 + Synpcc7942_0686 0.35 +1.7 681,387 + Synpcc7942_0686 0.35 +0.3 681,395 - Synpcc7942_0686 0.36 +3.3 681,395 - Synpcc7942_0686 0.36 +2.5 681,395 - Synpcc7942_0686 0.36 +0.6 681,395 - Synpcc7942_0686 0.36 -0.5 681,400 - Synpcc7942_0686 0.36 +2.2 681,482 + Synpcc7942_0686 0.43 -0.6 681,484 + Synpcc7942_0686 0.44 +1.8 681,484 + +4.1 681,490 - Synpcc7942_0686 0.44 +3.1 681,492 - Synpcc7942_0686 0.44 +2.1 681,525 + Synpcc7942_0686 0.47 +2.3 681,539 + Synpcc7942_0686 0.48 +1.4 681,539 + Synpcc7942_0686 0.48 +4.1 681,539 + Synpcc7942_0686 0.48 +2.2
Or see this region's nucleotide sequence