Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0616

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0614 and Synpcc7942_0615 are separated by 160 nucleotidesSynpcc7942_0615 and hrcA are separated by 57 nucleotideshrcA and Synpcc7942_0617 are separated by 11 nucleotidesSynpcc7942_0617 and ahcY are separated by 131 nucleotides Synpcc7942_0614: Synpcc7942_0614 - hypothetical protein, at 603,996 to 605,675 _0614 Synpcc7942_0615: Synpcc7942_0615 - Rhodanese-like, at 605,836 to 606,180 _0615 Synpcc7942_0616: hrcA - heat-inducible transcription repressor, at 606,238 to 607,299 hrcA Synpcc7942_0617: Synpcc7942_0617 - hypothetical protein, at 607,311 to 607,688 _0617 Synpcc7942_0618: ahcY - S-adenosyl-L-homocysteine hydrolase, at 607,820 to 609,100 ahcY Position (kb) 606 607 608Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 605.720 kb on - strandat 605.781 kb on + strandat 605.781 kb on + strandat 605.781 kb on + strandat 605.781 kb on + strandat 605.789 kb on - strandat 605.806 kb on - strandat 605.811 kb on + strandat 605.819 kb on - strandat 605.832 kb on + strandat 605.840 kb on - strandat 605.840 kb on - strandat 605.860 kb on + strandat 605.867 kb on + strandat 605.875 kb on - strand, within Synpcc7942_0615at 605.885 kb on - strand, within Synpcc7942_0615at 605.887 kb on + strand, within Synpcc7942_0615at 605.887 kb on + strand, within Synpcc7942_0615at 605.887 kb on + strand, within Synpcc7942_0615at 605.887 kb on + strand, within Synpcc7942_0615at 605.912 kb on + strand, within Synpcc7942_0615at 605.960 kb on + strand, within Synpcc7942_0615at 605.974 kb on + strand, within Synpcc7942_0615at 605.982 kb on - strand, within Synpcc7942_0615at 605.993 kb on + strand, within Synpcc7942_0615at 606.016 kb on + strand, within Synpcc7942_0615at 606.024 kb on - strand, within Synpcc7942_0615at 606.078 kb on - strand, within Synpcc7942_0615at 606.100 kb on + strand, within Synpcc7942_0615at 606.102 kb on - strand, within Synpcc7942_0615at 606.102 kb on - strand, within Synpcc7942_0615at 606.102 kb on - strand, within Synpcc7942_0615at 606.109 kb on - strand, within Synpcc7942_0615at 606.112 kb on + strand, within Synpcc7942_0615at 606.113 kb on + strand, within Synpcc7942_0615at 606.166 kb on + strandat 606.173 kb on - strandat 606.174 kb on + strandat 606.209 kb on - strandat 606.213 kb on - strandat 606.232 kb on + strandat 606.323 kb on + strandat 606.323 kb on + strandat 606.323 kb on + strandat 606.323 kb on + strandat 606.326 kb on - strandat 606.331 kb on - strandat 606.331 kb on - strandat 606.342 kb on + strandat 606.357 kb on + strand, within hrcAat 606.382 kb on + strand, within hrcAat 606.383 kb on - strand, within hrcAat 606.390 kb on - strand, within hrcAat 606.399 kb on - strand, within hrcAat 606.406 kb on + strand, within hrcAat 606.406 kb on + strand, within hrcAat 606.454 kb on - strand, within hrcAat 606.465 kb on + strand, within hrcAat 606.465 kb on + strand, within hrcAat 606.491 kb on - strand, within hrcAat 606.497 kb on - strand, within hrcAat 606.502 kb on + strand, within hrcAat 606.510 kb on - strand, within hrcAat 606.517 kb on + strand, within hrcAat 606.530 kb on + strand, within hrcAat 606.538 kb on - strand, within hrcAat 606.563 kb on + strand, within hrcAat 606.565 kb on + strand, within hrcAat 606.573 kb on + strand, within hrcAat 606.573 kb on + strand, within hrcAat 606.583 kb on + strand, within hrcAat 606.591 kb on - strand, within hrcAat 606.669 kb on - strand, within hrcAat 606.684 kb on + strand, within hrcAat 606.697 kb on - strand, within hrcAat 606.719 kb on + strand, within hrcAat 606.726 kb on - strand, within hrcAat 606.773 kb on - strand, within hrcAat 606.826 kb on + strand, within hrcAat 606.833 kb on + strand, within hrcAat 606.834 kb on - strand, within hrcAat 606.846 kb on + strand, within hrcAat 606.854 kb on - strand, within hrcAat 606.864 kb on - strand, within hrcAat 606.864 kb on - strand, within hrcAat 606.871 kb on + strand, within hrcAat 606.915 kb on + strand, within hrcAat 606.943 kb on + strand, within hrcAat 606.952 kb on + strand, within hrcAat 606.959 kb on + strand, within hrcAat 606.969 kb on + strand, within hrcAat 607.030 kb on - strand, within hrcAat 607.057 kb on + strand, within hrcAat 607.073 kb on + strand, within hrcAat 607.121 kb on + strand, within hrcAat 607.133 kb on + strand, within hrcAat 607.141 kb on - strand, within hrcAat 607.141 kb on - strand, within hrcAat 607.144 kb on + strand, within hrcAat 607.156 kb on + strand, within hrcAat 607.168 kb on + strand, within hrcAat 607.168 kb on + strand, within hrcAat 607.178 kb on + strand, within hrcAat 607.210 kb on - strandat 607.233 kb on - strandat 607.238 kb on + strandat 607.301 kb on - strandat 607.301 kb on - strandat 607.301 kb on - strandat 607.307 kb on - strandat 607.307 kb on - strandat 607.365 kb on + strand, within Synpcc7942_0617at 607.373 kb on + strand, within Synpcc7942_0617at 607.374 kb on - strand, within Synpcc7942_0617at 607.381 kb on - strand, within Synpcc7942_0617at 607.389 kb on + strand, within Synpcc7942_0617at 607.394 kb on + strand, within Synpcc7942_0617at 607.412 kb on + strand, within Synpcc7942_0617at 607.420 kb on - strand, within Synpcc7942_0617at 607.420 kb on - strand, within Synpcc7942_0617at 607.420 kb on - strand, within Synpcc7942_0617at 607.421 kb on - strand, within Synpcc7942_0617at 607.447 kb on - strand, within Synpcc7942_0617at 607.447 kb on - strand, within Synpcc7942_0617at 607.449 kb on + strand, within Synpcc7942_0617at 607.455 kb on + strand, within Synpcc7942_0617at 607.472 kb on + strand, within Synpcc7942_0617at 607.492 kb on - strand, within Synpcc7942_0617at 607.510 kb on + strand, within Synpcc7942_0617at 607.511 kb on + strand, within Synpcc7942_0617at 607.511 kb on - strand, within Synpcc7942_0617at 607.511 kb on - strand, within Synpcc7942_0617at 607.528 kb on + strand, within Synpcc7942_0617at 607.531 kb on + strand, within Synpcc7942_0617at 607.536 kb on - strand, within Synpcc7942_0617at 607.543 kb on + strand, within Synpcc7942_0617at 607.570 kb on - strandat 607.588 kb on + strand, within Synpcc7942_0617at 607.594 kb on - strand, within Synpcc7942_0617at 607.646 kb on + strand, within Synpcc7942_0617at 607.648 kb on + strand, within Synpcc7942_0617at 607.656 kb on - strandat 607.691 kb on - strandat 607.695 kb on + strandat 607.696 kb on + strandat 607.703 kb on - strandat 607.725 kb on + strandat 607.725 kb on + strandat 607.732 kb on - strandat 607.754 kb on + strandat 607.756 kb on - strandat 607.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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605,720 - +1.0
605,781 + +2.2
605,781 + +2.9
605,781 + -0.4
605,781 + -0.6
605,789 - -0.3
605,806 - +0.1
605,811 + -1.9
605,819 - -0.9
605,832 + -0.5
605,840 - -2.5
605,840 - +0.8
605,860 + -2.4
605,867 + -2.4
605,875 - Synpcc7942_0615 0.11 -2.9
605,885 - Synpcc7942_0615 0.14 -1.7
605,887 + Synpcc7942_0615 0.15 -2.0
605,887 + Synpcc7942_0615 0.15 -0.9
605,887 + Synpcc7942_0615 0.15 +1.0
605,887 + Synpcc7942_0615 0.15 -1.5
605,912 + Synpcc7942_0615 0.22 +0.2
605,960 + Synpcc7942_0615 0.36 -3.2
605,974 + Synpcc7942_0615 0.40 -2.3
605,982 - Synpcc7942_0615 0.42 -1.1
605,993 + Synpcc7942_0615 0.46 +0.4
606,016 + Synpcc7942_0615 0.52 +0.7
606,024 - Synpcc7942_0615 0.54 -2.0
606,078 - Synpcc7942_0615 0.70 -1.8
606,100 + Synpcc7942_0615 0.77 -1.8
606,102 - Synpcc7942_0615 0.77 -1.4
606,102 - Synpcc7942_0615 0.77 -0.3
606,102 - Synpcc7942_0615 0.77 -1.4
606,109 - Synpcc7942_0615 0.79 -1.4
606,112 + Synpcc7942_0615 0.80 -1.8
606,113 + Synpcc7942_0615 0.80 -2.5
606,166 + -1.3
606,173 - -3.8
606,174 + +2.4
606,209 - +1.0
606,213 - +0.2
606,232 + +0.4
606,323 + +1.1
606,323 + +4.0
606,323 + +1.7
606,323 + -1.1
606,326 - +0.2
606,331 - +2.6
606,331 - +1.0
606,342 + +2.3
606,357 + hrcA Synpcc7942_0616 0.11 -0.8
606,382 + hrcA Synpcc7942_0616 0.14 +0.8
606,383 - hrcA Synpcc7942_0616 0.14 -0.9
606,390 - hrcA Synpcc7942_0616 0.14 +2.8
606,399 - hrcA Synpcc7942_0616 0.15 +2.4
606,406 + hrcA Synpcc7942_0616 0.16 +1.7
606,406 + hrcA Synpcc7942_0616 0.16 -0.4
606,454 - hrcA Synpcc7942_0616 0.20 +0.0
606,465 + hrcA Synpcc7942_0616 0.21 +0.6
606,465 + hrcA Synpcc7942_0616 0.21 +1.1
606,491 - hrcA Synpcc7942_0616 0.24 -0.5
606,497 - hrcA Synpcc7942_0616 0.24 +2.1
606,502 + hrcA Synpcc7942_0616 0.25 +1.4
606,510 - hrcA Synpcc7942_0616 0.26 +2.6
606,517 + hrcA Synpcc7942_0616 0.26 +1.6
606,530 + hrcA Synpcc7942_0616 0.27 +1.1
606,538 - hrcA Synpcc7942_0616 0.28 +2.0
606,563 + hrcA Synpcc7942_0616 0.31 +0.9
606,565 + hrcA Synpcc7942_0616 0.31 +1.5
606,573 + hrcA Synpcc7942_0616 0.32 +3.6
606,573 + hrcA Synpcc7942_0616 0.32 -1.3
606,583 + hrcA Synpcc7942_0616 0.32 +3.5
606,591 - hrcA Synpcc7942_0616 0.33 +2.0
606,669 - hrcA Synpcc7942_0616 0.41 +1.0
606,684 + hrcA Synpcc7942_0616 0.42 -4.3
606,697 - hrcA Synpcc7942_0616 0.43 +2.4
606,719 + hrcA Synpcc7942_0616 0.45 +0.6
606,726 - hrcA Synpcc7942_0616 0.46 -1.0
606,773 - hrcA Synpcc7942_0616 0.50 +0.2
606,826 + hrcA Synpcc7942_0616 0.55 -0.0
606,833 + hrcA Synpcc7942_0616 0.56 +3.8
606,834 - hrcA Synpcc7942_0616 0.56 +1.5
606,846 + hrcA Synpcc7942_0616 0.57 +0.6
606,854 - hrcA Synpcc7942_0616 0.58 +1.6
606,864 - hrcA Synpcc7942_0616 0.59 +1.4
606,864 - hrcA Synpcc7942_0616 0.59 +0.6
606,871 + hrcA Synpcc7942_0616 0.60 -0.8
606,915 + hrcA Synpcc7942_0616 0.64 +0.7
606,943 + hrcA Synpcc7942_0616 0.66 +1.0
606,952 + hrcA Synpcc7942_0616 0.67 +0.9
606,959 + hrcA Synpcc7942_0616 0.68 +0.8
606,969 + hrcA Synpcc7942_0616 0.69 -1.6
607,030 - hrcA Synpcc7942_0616 0.75 +0.6
607,057 + hrcA Synpcc7942_0616 0.77 +1.6
607,073 + hrcA Synpcc7942_0616 0.79 +3.9
607,121 + hrcA Synpcc7942_0616 0.83 -0.1
607,133 + hrcA Synpcc7942_0616 0.84 +0.2
607,141 - hrcA Synpcc7942_0616 0.85 +3.3
607,141 - hrcA Synpcc7942_0616 0.85 +1.5
607,144 + hrcA Synpcc7942_0616 0.85 +2.5
607,156 + hrcA Synpcc7942_0616 0.86 -1.8
607,168 + hrcA Synpcc7942_0616 0.88 -0.5
607,168 + hrcA Synpcc7942_0616 0.88 -1.2
607,178 + hrcA Synpcc7942_0616 0.89 +3.7
607,210 - +3.5
607,233 - -2.4
607,238 + +2.4
607,301 - +1.1
607,301 - -0.6
607,301 - -0.6
607,307 - -0.9
607,307 - -0.2
607,365 + Synpcc7942_0617 0.14 -1.5
607,373 + Synpcc7942_0617 0.16 +1.3
607,374 - Synpcc7942_0617 0.17 -0.7
607,381 - Synpcc7942_0617 0.19 +1.7
607,389 + Synpcc7942_0617 0.21 +2.8
607,394 + Synpcc7942_0617 0.22 -4.7
607,412 + Synpcc7942_0617 0.27 -1.9
607,420 - Synpcc7942_0617 0.29 +3.4
607,420 - Synpcc7942_0617 0.29 +4.0
607,420 - Synpcc7942_0617 0.29 -2.3
607,421 - Synpcc7942_0617 0.29 +2.3
607,447 - Synpcc7942_0617 0.36 +3.3
607,447 - Synpcc7942_0617 0.36 +1.6
607,449 + Synpcc7942_0617 0.37 +1.8
607,455 + Synpcc7942_0617 0.38 +1.9
607,472 + Synpcc7942_0617 0.43 +1.2
607,492 - Synpcc7942_0617 0.48 +1.4
607,510 + Synpcc7942_0617 0.53 +1.0
607,511 + Synpcc7942_0617 0.53 -0.3
607,511 - Synpcc7942_0617 0.53 -1.3
607,511 - Synpcc7942_0617 0.53 -3.0
607,528 + Synpcc7942_0617 0.57 +0.4
607,531 + Synpcc7942_0617 0.58 -0.9
607,536 - Synpcc7942_0617 0.60 +0.1
607,543 + Synpcc7942_0617 0.61 -0.0
607,570 - +4.2
607,588 + Synpcc7942_0617 0.73 -2.4
607,594 - Synpcc7942_0617 0.75 +2.3
607,646 + Synpcc7942_0617 0.89 -0.5
607,648 + Synpcc7942_0617 0.89 +4.1
607,656 - -0.4
607,691 - +1.8
607,695 + -3.2
607,696 + -2.0
607,703 - +0.1
607,725 + -1.4
607,725 + -3.6
607,732 - +0.5
607,754 + -1.7
607,756 - -0.2
607,824 - +0.2

Or see this region's nucleotide sequence