Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nfrC and Synpcc7942_0553 overlap by 4 nucleotides Synpcc7942_0553 and ychF are separated by 59 nucleotides
Synpcc7942_0552: nfrC - UDP-N-acetylglucosamine 2-epimerase, at 534,067 to 535,185
nfrC
Synpcc7942_0553: Synpcc7942_0553 - Secretion protein HlyD, at 535,182 to 536,534
_0553
Synpcc7942_0554: ychF - translation-associated GTPase, at 536,594 to 537,685
ychF
Position (kb) 535
536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 535.203 kb on + strand at 535.234 kb on - strand at 535.236 kb on + strand at 535.244 kb on - strand at 535.384 kb on + strand, within Synpcc7942_0553 at 535.394 kb on + strand, within Synpcc7942_0553 at 535.394 kb on + strand, within Synpcc7942_0553 at 535.394 kb on - strand, within Synpcc7942_0553 at 535.396 kb on + strand, within Synpcc7942_0553 at 535.402 kb on - strand, within Synpcc7942_0553 at 535.402 kb on - strand, within Synpcc7942_0553 at 535.463 kb on - strand, within Synpcc7942_0553 at 535.485 kb on - strand, within Synpcc7942_0553 at 535.552 kb on - strand, within Synpcc7942_0553 at 535.559 kb on - strand, within Synpcc7942_0553 at 535.575 kb on - strand, within Synpcc7942_0553 at 535.578 kb on + strand, within Synpcc7942_0553 at 535.578 kb on + strand, within Synpcc7942_0553 at 535.629 kb on - strand, within Synpcc7942_0553 at 535.640 kb on + strand, within Synpcc7942_0553 at 535.648 kb on + strand, within Synpcc7942_0553 at 535.678 kb on - strand, within Synpcc7942_0553 at 535.678 kb on - strand, within Synpcc7942_0553 at 535.705 kb on - strand, within Synpcc7942_0553 at 535.730 kb on + strand, within Synpcc7942_0553 at 535.735 kb on + strand, within Synpcc7942_0553 at 535.743 kb on - strand, within Synpcc7942_0553 at 535.753 kb on - strand, within Synpcc7942_0553 at 535.758 kb on + strand, within Synpcc7942_0553 at 535.758 kb on + strand, within Synpcc7942_0553 at 535.766 kb on - strand, within Synpcc7942_0553 at 535.766 kb on - strand, within Synpcc7942_0553 at 535.812 kb on - strand, within Synpcc7942_0553 at 535.812 kb on - strand, within Synpcc7942_0553 at 535.816 kb on - strand, within Synpcc7942_0553 at 535.836 kb on + strand, within Synpcc7942_0553 at 535.837 kb on + strand, within Synpcc7942_0553 at 535.855 kb on + strand, within Synpcc7942_0553 at 535.929 kb on - strand, within Synpcc7942_0553 at 535.968 kb on + strand, within Synpcc7942_0553 at 535.968 kb on + strand, within Synpcc7942_0553 at 535.974 kb on + strand, within Synpcc7942_0553 at 535.976 kb on - strand, within Synpcc7942_0553 at 536.009 kb on - strand, within Synpcc7942_0553 at 536.070 kb on + strand, within Synpcc7942_0553 at 536.097 kb on + strand, within Synpcc7942_0553 at 536.097 kb on + strand, within Synpcc7942_0553 at 536.105 kb on - strand, within Synpcc7942_0553 at 536.119 kb on - strand, within Synpcc7942_0553 at 536.119 kb on - strand, within Synpcc7942_0553 at 536.135 kb on + strand, within Synpcc7942_0553 at 536.135 kb on + strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.145 kb on - strand, within Synpcc7942_0553 at 536.156 kb on - strand, within Synpcc7942_0553 at 536.175 kb on + strand, within Synpcc7942_0553 at 536.189 kb on - strand, within Synpcc7942_0553 at 536.198 kb on + strand, within Synpcc7942_0553 at 536.206 kb on - strand, within Synpcc7942_0553 at 536.226 kb on - strand, within Synpcc7942_0553 at 536.229 kb on + strand, within Synpcc7942_0553 at 536.262 kb on + strand, within Synpcc7942_0553 at 536.270 kb on - strand, within Synpcc7942_0553 at 536.270 kb on - strand, within Synpcc7942_0553 at 536.294 kb on - strand, within Synpcc7942_0553 at 536.318 kb on - strand, within Synpcc7942_0553 at 536.320 kb on + strand, within Synpcc7942_0553 at 536.328 kb on - strand, within Synpcc7942_0553 at 536.374 kb on + strand, within Synpcc7942_0553 at 536.377 kb on - strand, within Synpcc7942_0553 at 536.377 kb on - strand, within Synpcc7942_0553 at 536.380 kb on - strand, within Synpcc7942_0553 at 536.382 kb on - strand, within Synpcc7942_0553 at 536.382 kb on - strand, within Synpcc7942_0553 at 536.399 kb on - strand at 536.416 kb on + strand at 536.429 kb on + strand at 536.447 kb on - strand at 536.495 kb on + strand at 536.557 kb on + strand at 536.580 kb on + strand at 536.580 kb on + strand at 536.591 kb on - strand at 536.596 kb on + strand at 536.596 kb on + strand at 536.607 kb on + strand at 536.617 kb on - strand at 536.620 kb on + strand at 536.623 kb on - strand at 536.629 kb on + strand at 536.634 kb on + strand at 536.680 kb on - strand at 536.695 kb on + strand at 536.710 kb on - strand at 536.764 kb on + strand, within ychF at 536.774 kb on + strand, within ychF at 536.781 kb on + strand, within ychF at 536.782 kb on - strand, within ychF at 536.783 kb on + strand, within ychF at 536.783 kb on + strand, within ychF at 536.816 kb on + strand, within ychF at 536.818 kb on - strand, within ychF at 536.821 kb on + strand, within ychF at 536.840 kb on + strand, within ychF at 536.841 kb on + strand, within ychF at 536.843 kb on - strand, within ychF at 536.846 kb on + strand, within ychF at 536.859 kb on - strand, within ychF at 536.900 kb on + strand, within ychF at 536.910 kb on + strand, within ychF at 536.924 kb on + strand, within ychF at 536.999 kb on + strand, within ychF at 537.047 kb on - strand, within ychF at 537.080 kb on + strand, within ychF at 537.109 kb on - strand, within ychF at 537.118 kb on - strand, within ychF at 537.167 kb on + strand, within ychF at 537.175 kb on - strand, within ychF at 537.175 kb on - strand, within ychF at 537.191 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.241 kb on + strand at 537.265 kb on - strand, within ychF at 537.293 kb on + strand, within ychF at 537.295 kb on + strand, within ychF at 537.297 kb on - strand, within ychF at 537.297 kb on - strand, within ychF at 537.299 kb on - strand, within ychF at 537.334 kb on + strand, within ychF at 537.334 kb on + strand, within ychF at 537.387 kb on - strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.451 kb on + strand, within ychF at 537.466 kb on + strand, within ychF at 537.474 kb on - strand, within ychF at 537.492 kb on + strand, within ychF at 537.494 kb on + strand, within ychF at 537.494 kb on + strand, within ychF at 537.502 kb on + strand at 537.510 kb on + strand, within ychF at 537.517 kb on - strand, within ychF
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 535,203 + -1.2 535,234 - -0.6 535,236 + -4.7 535,244 - -2.9 535,384 + Synpcc7942_0553 0.15 -2.4 535,394 + Synpcc7942_0553 0.16 -3.3 535,394 + Synpcc7942_0553 0.16 -2.5 535,394 - Synpcc7942_0553 0.16 -0.8 535,396 + Synpcc7942_0553 0.16 -1.8 535,402 - Synpcc7942_0553 0.16 -0.0 535,402 - Synpcc7942_0553 0.16 -1.9 535,463 - Synpcc7942_0553 0.21 -2.4 535,485 - Synpcc7942_0553 0.22 -1.3 535,552 - Synpcc7942_0553 0.27 -1.4 535,559 - Synpcc7942_0553 0.28 -3.4 535,575 - Synpcc7942_0553 0.29 -0.6 535,578 + Synpcc7942_0553 0.29 -1.2 535,578 + Synpcc7942_0553 0.29 -1.2 535,629 - Synpcc7942_0553 0.33 -3.3 535,640 + Synpcc7942_0553 0.34 +0.6 535,648 + Synpcc7942_0553 0.34 +0.1 535,678 - Synpcc7942_0553 0.37 -1.5 535,678 - Synpcc7942_0553 0.37 -1.2 535,705 - Synpcc7942_0553 0.39 -0.9 535,730 + Synpcc7942_0553 0.41 -2.0 535,735 + Synpcc7942_0553 0.41 +1.7 535,743 - Synpcc7942_0553 0.41 -1.3 535,753 - Synpcc7942_0553 0.42 -1.1 535,758 + Synpcc7942_0553 0.43 -0.2 535,758 + Synpcc7942_0553 0.43 -3.5 535,766 - Synpcc7942_0553 0.43 -2.8 535,766 - Synpcc7942_0553 0.43 -0.6 535,812 - Synpcc7942_0553 0.47 -2.1 535,812 - Synpcc7942_0553 0.47 -0.6 535,816 - Synpcc7942_0553 0.47 -0.2 535,836 + Synpcc7942_0553 0.48 -0.0 535,837 + Synpcc7942_0553 0.48 -0.2 535,855 + Synpcc7942_0553 0.50 -1.3 535,929 - Synpcc7942_0553 0.55 -1.6 535,968 + Synpcc7942_0553 0.58 +0.6 535,968 + Synpcc7942_0553 0.58 -0.7 535,974 + Synpcc7942_0553 0.59 -3.9 535,976 - Synpcc7942_0553 0.59 -1.9 536,009 - Synpcc7942_0553 0.61 +0.2 536,070 + Synpcc7942_0553 0.66 +0.1 536,097 + Synpcc7942_0553 0.68 -3.7 536,097 + Synpcc7942_0553 0.68 -2.5 536,105 - Synpcc7942_0553 0.68 +1.0 536,119 - Synpcc7942_0553 0.69 -0.2 536,119 - Synpcc7942_0553 0.69 -0.0 536,135 + Synpcc7942_0553 0.70 -1.2 536,135 + Synpcc7942_0553 0.70 -0.0 536,144 - Synpcc7942_0553 0.71 +0.3 536,144 - Synpcc7942_0553 0.71 -0.9 536,144 - Synpcc7942_0553 0.71 +0.6 536,145 - Synpcc7942_0553 0.71 -2.5 536,156 - Synpcc7942_0553 0.72 -0.6 536,175 + Synpcc7942_0553 0.73 -2.3 536,189 - Synpcc7942_0553 0.74 -2.1 536,198 + Synpcc7942_0553 0.75 -3.6 536,206 - Synpcc7942_0553 0.76 -3.1 536,226 - Synpcc7942_0553 0.77 -2.1 536,229 + Synpcc7942_0553 0.77 -1.3 536,262 + Synpcc7942_0553 0.80 -1.5 536,270 - Synpcc7942_0553 0.80 -1.9 536,270 - Synpcc7942_0553 0.80 +0.2 536,294 - Synpcc7942_0553 0.82 -0.2 536,318 - Synpcc7942_0553 0.84 -0.7 536,320 + Synpcc7942_0553 0.84 -3.6 536,328 - Synpcc7942_0553 0.85 -2.0 536,374 + Synpcc7942_0553 0.88 +0.2 536,377 - Synpcc7942_0553 0.88 -1.6 536,377 - Synpcc7942_0553 0.88 -3.3 536,380 - Synpcc7942_0553 0.89 -2.0 536,382 - Synpcc7942_0553 0.89 -1.1 536,382 - Synpcc7942_0553 0.89 +0.2 536,399 - -0.9 536,416 + -1.7 536,429 + -0.0 536,447 - -0.8 536,495 + -4.6 536,557 + +1.3 536,580 + +0.5 536,580 + -3.1 536,591 - +2.8 536,596 + -3.3 536,596 + +2.6 536,607 + +8.9 536,617 - +4.4 536,620 + +7.7 536,623 - +6.9 536,629 + +9.6 536,634 + +7.5 536,680 - +6.7 536,695 + +8.3 536,710 - +6.3 536,764 + ychF Synpcc7942_0554 0.16 +7.2 536,774 + ychF Synpcc7942_0554 0.16 +7.3 536,781 + ychF Synpcc7942_0554 0.17 +9.0 536,782 - ychF Synpcc7942_0554 0.17 +5.0 536,783 + ychF Synpcc7942_0554 0.17 +5.6 536,783 + ychF Synpcc7942_0554 0.17 +8.2 536,816 + ychF Synpcc7942_0554 0.20 +4.9 536,818 - ychF Synpcc7942_0554 0.21 +8.9 536,821 + ychF Synpcc7942_0554 0.21 +2.4 536,840 + ychF Synpcc7942_0554 0.23 +4.2 536,841 + ychF Synpcc7942_0554 0.23 +7.3 536,843 - ychF Synpcc7942_0554 0.23 +9.0 536,846 + ychF Synpcc7942_0554 0.23 +5.2 536,859 - ychF Synpcc7942_0554 0.24 +4.6 536,900 + ychF Synpcc7942_0554 0.28 +6.0 536,910 + ychF Synpcc7942_0554 0.29 +8.8 536,924 + ychF Synpcc7942_0554 0.30 +4.6 536,999 + ychF Synpcc7942_0554 0.37 +8.8 537,047 - ychF Synpcc7942_0554 0.41 +8.9 537,080 + ychF Synpcc7942_0554 0.45 +7.2 537,109 - ychF Synpcc7942_0554 0.47 +3.9 537,118 - ychF Synpcc7942_0554 0.48 +8.0 537,167 + ychF Synpcc7942_0554 0.52 +7.3 537,175 - ychF Synpcc7942_0554 0.53 +9.8 537,175 - ychF Synpcc7942_0554 0.53 +7.9 537,191 + ychF Synpcc7942_0554 0.55 +9.7 537,196 + ychF Synpcc7942_0554 0.55 +7.3 537,196 + ychF Synpcc7942_0554 0.55 +8.2 537,196 + ychF Synpcc7942_0554 0.55 +7.3 537,241 + +3.1 537,265 - ychF Synpcc7942_0554 0.61 +6.2 537,293 + ychF Synpcc7942_0554 0.64 +5.0 537,295 + ychF Synpcc7942_0554 0.64 +7.9 537,297 - ychF Synpcc7942_0554 0.64 +6.5 537,297 - ychF Synpcc7942_0554 0.64 +10.1 537,299 - ychF Synpcc7942_0554 0.65 +8.0 537,334 + ychF Synpcc7942_0554 0.68 +2.8 537,334 + ychF Synpcc7942_0554 0.68 +7.4 537,387 - ychF Synpcc7942_0554 0.73 +6.4 537,411 + ychF Synpcc7942_0554 0.75 +6.8 537,411 + ychF Synpcc7942_0554 0.75 +7.1 537,411 + ychF Synpcc7942_0554 0.75 +4.1 537,411 + ychF Synpcc7942_0554 0.75 +6.2 537,411 + ychF Synpcc7942_0554 0.75 +6.5 537,411 + ychF Synpcc7942_0554 0.75 +4.4 537,411 + ychF Synpcc7942_0554 0.75 +4.7 537,411 + ychF Synpcc7942_0554 0.75 +4.9 537,419 - ychF Synpcc7942_0554 0.76 +8.2 537,419 - ychF Synpcc7942_0554 0.76 +9.9 537,419 - ychF Synpcc7942_0554 0.76 +5.5 537,419 - ychF Synpcc7942_0554 0.76 +7.7 537,419 - ychF Synpcc7942_0554 0.76 +8.5 537,419 - ychF Synpcc7942_0554 0.76 +5.7 537,419 - ychF Synpcc7942_0554 0.76 +3.6 537,419 - ychF Synpcc7942_0554 0.76 +10.6 537,451 + ychF Synpcc7942_0554 0.78 +8.5 537,466 + ychF Synpcc7942_0554 0.80 -0.2 537,474 - ychF Synpcc7942_0554 0.81 +4.7 537,492 + ychF Synpcc7942_0554 0.82 +7.2 537,494 + ychF Synpcc7942_0554 0.82 +4.2 537,494 + ychF Synpcc7942_0554 0.82 +8.5 537,502 + +8.6 537,510 + ychF Synpcc7942_0554 0.84 +1.0 537,517 - ychF Synpcc7942_0554 0.85 +9.0
Or see this region's nucleotide sequence