Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0490 and Synpcc7942_0491 are separated by 259 nucleotides Synpcc7942_0491 and ribF are separated by 39 nucleotides
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Synpcc7942_0491: Synpcc7942_0491 - hypothetical protein, at 479,700 to 479,837
_0491
Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824
ribF
Position (kb) 479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 478.757 kb on - strand, within Synpcc7942_0490 at 478.769 kb on + strand, within Synpcc7942_0490 at 479.032 kb on - strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.123 kb on - strand, within Synpcc7942_0490 at 479.125 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.193 kb on - strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.271 kb on + strand at 479.312 kb on - strand at 479.346 kb on - strand at 479.392 kb on + strand at 479.473 kb on + strand at 479.473 kb on + strand at 479.620 kb on - strand at 479.655 kb on - strand at 479.658 kb on + strand at 479.666 kb on - strand at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.762 kb on + strand, within Synpcc7942_0491 at 479.770 kb on - strand, within Synpcc7942_0491 at 479.781 kb on - strand, within Synpcc7942_0491 at 479.788 kb on + strand, within Synpcc7942_0491 at 479.804 kb on + strand, within Synpcc7942_0491 at 479.811 kb on + strand, within Synpcc7942_0491 at 479.820 kb on - strand, within Synpcc7942_0491 at 479.832 kb on - strand at 479.849 kb on - strand at 479.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 478,757 - Synpcc7942_0490 0.67 -0.1 478,769 + Synpcc7942_0490 0.67 -2.1 479,032 - Synpcc7942_0490 0.80 -0.1 479,116 + Synpcc7942_0490 0.84 -0.6 479,116 + Synpcc7942_0490 0.84 -1.0 479,123 - Synpcc7942_0490 0.84 -1.0 479,125 + Synpcc7942_0490 0.85 -1.8 479,185 + Synpcc7942_0490 0.87 +0.8 479,185 + Synpcc7942_0490 0.87 +0.1 479,185 + Synpcc7942_0490 0.87 -1.0 479,193 - Synpcc7942_0490 0.88 -0.6 479,220 + Synpcc7942_0490 0.89 -1.4 479,220 + Synpcc7942_0490 0.89 -2.8 479,271 + -0.6 479,312 - -3.7 479,346 - -0.6 479,392 + -1.2 479,473 + -2.9 479,473 + -2.6 479,620 - +0.4 479,655 - -1.6 479,658 + -1.0 479,666 - +0.0 479,737 - Synpcc7942_0491 0.27 +3.1 479,737 - Synpcc7942_0491 0.27 +0.3 479,737 - Synpcc7942_0491 0.27 -2.2 479,737 - Synpcc7942_0491 0.27 -0.5 479,762 + Synpcc7942_0491 0.45 +0.0 479,770 - Synpcc7942_0491 0.51 -1.4 479,781 - Synpcc7942_0491 0.59 +0.3 479,788 + Synpcc7942_0491 0.64 -0.7 479,804 + Synpcc7942_0491 0.75 +0.4 479,811 + Synpcc7942_0491 0.80 +0.3 479,820 - Synpcc7942_0491 0.87 -0.2 479,832 - -2.1 479,849 - +2.9 479,899 + -0.6
Or see this region's nucleotide sequence