Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0482 and Synpcc7942_0483 are separated by 2 nucleotides Synpcc7942_0483 and Synpcc7942_0484 are separated by 212 nucleotides Synpcc7942_0484 and gpmB are separated by 100 nucleotides
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Synpcc7942_0483: Synpcc7942_0483 - hypothetical protein, at 468,776 to 469,219
_0483
Synpcc7942_0484: Synpcc7942_0484 - hypothetical protein, at 469,432 to 470,874
_0484
Synpcc7942_0485: gpmB - phosphoglycerate mutase, at 470,975 to 472,312
gpmB
Position (kb) 469
470
471 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 468.704 kb on + strand at 468.748 kb on + strand at 468.756 kb on - strand at 469.134 kb on + strand, within Synpcc7942_0483 at 469.161 kb on + strand, within Synpcc7942_0483 at 469.237 kb on + strand at 469.346 kb on + strand at 469.419 kb on + strand at 469.419 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.427 kb on - strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.430 kb on + strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.459 kb on + strand at 469.459 kb on + strand at 469.531 kb on - strand at 469.600 kb on + strand, within Synpcc7942_0484 at 469.657 kb on - strand, within Synpcc7942_0484 at 469.721 kb on + strand, within Synpcc7942_0484 at 469.807 kb on + strand, within Synpcc7942_0484 at 469.834 kb on + strand, within Synpcc7942_0484 at 469.883 kb on + strand, within Synpcc7942_0484 at 469.893 kb on + strand, within Synpcc7942_0484 at 470.144 kb on + strand, within Synpcc7942_0484 at 470.167 kb on - strand, within Synpcc7942_0484 at 470.302 kb on - strand, within Synpcc7942_0484 at 470.573 kb on - strand, within Synpcc7942_0484 at 470.599 kb on + strand, within Synpcc7942_0484 at 470.654 kb on + strand, within Synpcc7942_0484 at 470.719 kb on - strand, within Synpcc7942_0484 at 470.764 kb on - strand at 470.780 kb on + strand at 470.836 kb on - strand at 470.853 kb on - strand at 470.860 kb on - strand at 470.860 kb on - strand at 470.860 kb on - strand at 470.871 kb on + strand at 470.906 kb on - strand at 470.945 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 468,704 + +4.7 468,748 + +0.6 468,756 - +6.3 469,134 + Synpcc7942_0483 0.81 -0.4 469,161 + Synpcc7942_0483 0.87 +3.4 469,237 + -1.4 469,346 + +1.0 469,419 + -1.4 469,419 + -0.4 469,424 + +1.1 469,424 + +1.7 469,424 + +0.7 469,427 - +0.5 469,429 + -1.4 469,429 + +0.4 469,429 + +2.6 469,429 + -3.3 469,429 + -0.6 469,429 + -2.8 469,429 + -2.6 469,429 + +1.6 469,429 + +0.2 469,430 + -1.0 469,437 - +1.3 469,437 - -3.1 469,437 - +1.9 469,452 - -0.4 469,452 - -1.7 469,459 + -1.0 469,459 + -1.8 469,531 - +0.4 469,600 + Synpcc7942_0484 0.12 +0.9 469,657 - Synpcc7942_0484 0.16 -3.2 469,721 + Synpcc7942_0484 0.20 -1.2 469,807 + Synpcc7942_0484 0.26 -1.0 469,834 + Synpcc7942_0484 0.28 +1.5 469,883 + Synpcc7942_0484 0.31 -0.6 469,893 + Synpcc7942_0484 0.32 -0.7 470,144 + Synpcc7942_0484 0.49 -1.8 470,167 - Synpcc7942_0484 0.51 -4.1 470,302 - Synpcc7942_0484 0.60 +0.3 470,573 - Synpcc7942_0484 0.79 -1.3 470,599 + Synpcc7942_0484 0.81 -0.7 470,654 + Synpcc7942_0484 0.85 -2.0 470,719 - Synpcc7942_0484 0.89 -0.4 470,764 - -1.6 470,780 + -1.4 470,836 - -0.7 470,853 - -1.1 470,860 - +1.6 470,860 - -1.6 470,860 - -1.8 470,871 + -2.5 470,906 - -0.6 470,945 + -0.2 470,947 + +1.0 470,947 + -1.1 470,947 + -2.3
Or see this region's nucleotide sequence