Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0380 and Synpcc7942_0381 are separated by 203 nucleotides Synpcc7942_0381 and Synpcc7942_0382 are separated by 109 nucleotides Synpcc7942_0382 and Synpcc7942_0383 are separated by 39 nucleotides
Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828
_0380
Synpcc7942_0381: Synpcc7942_0381 - hypothetical protein, at 375,032 to 375,346
_0381
Synpcc7942_0382: Synpcc7942_0382 - hypothetical protein, at 375,456 to 375,722
_0382
Synpcc7942_0383: Synpcc7942_0383 - hypothetical protein, at 375,762 to 376,448
_0383
Position (kb) 375
376 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 374.812 kb on + strand at 374.832 kb on + strand at 374.850 kb on - strand at 374.924 kb on + strand at 374.928 kb on + strand at 374.969 kb on - strand at 374.970 kb on + strand at 374.978 kb on + strand at 374.990 kb on + strand at 375.025 kb on + strand at 375.030 kb on + strand at 375.030 kb on + strand at 375.056 kb on - strand at 375.083 kb on + strand, within Synpcc7942_0381 at 375.091 kb on - strand, within Synpcc7942_0381 at 375.109 kb on + strand, within Synpcc7942_0381 at 375.115 kb on + strand, within Synpcc7942_0381 at 375.117 kb on - strand, within Synpcc7942_0381 at 375.123 kb on - strand, within Synpcc7942_0381 at 375.137 kb on + strand, within Synpcc7942_0381 at 375.203 kb on - strand, within Synpcc7942_0381 at 375.222 kb on + strand, within Synpcc7942_0381 at 375.247 kb on + strand, within Synpcc7942_0381 at 375.251 kb on + strand, within Synpcc7942_0381 at 375.259 kb on - strand, within Synpcc7942_0381 at 375.262 kb on + strand, within Synpcc7942_0381 at 375.270 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.326 kb on - strand at 375.326 kb on - strand at 375.352 kb on - strand at 375.354 kb on + strand at 375.378 kb on + strand at 375.383 kb on + strand at 375.386 kb on - strand at 375.386 kb on - strand at 375.388 kb on - strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.529 kb on + strand, within Synpcc7942_0382 at 375.557 kb on - strand, within Synpcc7942_0382 at 375.584 kb on - strand, within Synpcc7942_0382 at 375.770 kb on + strand at 375.770 kb on + strand at 375.880 kb on + strand, within Synpcc7942_0383 at 375.899 kb on - strand, within Synpcc7942_0383 at 375.954 kb on + strand, within Synpcc7942_0383 at 375.962 kb on - strand, within Synpcc7942_0383 at 375.971 kb on + strand, within Synpcc7942_0383 at 375.979 kb on - strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.072 kb on - strand, within Synpcc7942_0383 at 376.085 kb on - strand, within Synpcc7942_0383 at 376.244 kb on + strand, within Synpcc7942_0383 at 376.254 kb on - strand, within Synpcc7942_0383 at 376.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 374,812 + -2.7 374,832 + -3.5 374,850 - -1.7 374,924 + -2.0 374,928 + -2.1 374,969 - -2.7 374,970 + -1.2 374,978 + -2.3 374,990 + -1.1 375,025 + +0.3 375,030 + -1.6 375,030 + -1.3 375,056 - -0.9 375,083 + Synpcc7942_0381 0.16 -1.6 375,091 - Synpcc7942_0381 0.19 -1.3 375,109 + Synpcc7942_0381 0.24 -2.0 375,115 + Synpcc7942_0381 0.26 -1.1 375,117 - Synpcc7942_0381 0.27 -4.4 375,123 - Synpcc7942_0381 0.29 -3.2 375,137 + Synpcc7942_0381 0.33 -1.6 375,203 - Synpcc7942_0381 0.54 -1.5 375,222 + Synpcc7942_0381 0.60 -2.8 375,247 + Synpcc7942_0381 0.68 +0.4 375,251 + Synpcc7942_0381 0.70 -0.1 375,259 - Synpcc7942_0381 0.72 -1.1 375,262 + Synpcc7942_0381 0.73 -3.7 375,270 - Synpcc7942_0381 0.76 -2.0 375,309 - Synpcc7942_0381 0.88 -3.0 375,309 - Synpcc7942_0381 0.88 -2.0 375,318 + -1.4 375,318 + -2.6 375,318 + +0.4 375,318 + +0.2 375,326 - +0.0 375,326 - -3.9 375,352 - -1.8 375,354 + -1.4 375,378 + +0.6 375,383 + -4.7 375,386 - -3.2 375,386 - +1.2 375,388 - -0.9 375,393 + -0.9 375,393 + -0.6 375,393 + +1.8 375,393 + -1.9 375,393 + -1.7 375,393 + +0.2 375,393 + -0.2 375,393 + +0.7 375,393 + -0.8 375,401 - +0.1 375,401 - -1.0 375,401 - -0.2 375,401 - -2.3 375,401 - -2.1 375,401 - -2.0 375,401 - -0.9 375,529 + Synpcc7942_0382 0.27 +0.2 375,557 - Synpcc7942_0382 0.38 +0.1 375,584 - Synpcc7942_0382 0.48 +1.4 375,770 + +1.1 375,770 + -0.6 375,880 + Synpcc7942_0383 0.17 -1.3 375,899 - Synpcc7942_0383 0.20 -1.3 375,954 + Synpcc7942_0383 0.28 +1.8 375,962 - Synpcc7942_0383 0.29 +1.6 375,971 + Synpcc7942_0383 0.30 +2.6 375,979 - Synpcc7942_0383 0.32 -0.8 376,064 + Synpcc7942_0383 0.44 -2.6 376,064 + Synpcc7942_0383 0.44 +2.2 376,064 + Synpcc7942_0383 0.44 -4.2 376,072 - Synpcc7942_0383 0.45 +1.8 376,085 - Synpcc7942_0383 0.47 -2.6 376,244 + Synpcc7942_0383 0.70 -2.4 376,254 - Synpcc7942_0383 0.72 -1.9 376,337 + -0.4
Or see this region's nucleotide sequence