Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0242 and hliC are separated by 103 nucleotides hliC and glgP are separated by 99 nucleotides
Synpcc7942_0242: Synpcc7942_0242 - K+-dependent Na+/Ca+ exchanger related-protein, at 237,166 to 238,275
_0242
Synpcc7942_0243: hliC - possible high light inducible polypeptide HliC, at 238,379 to 238,522
hliC
Synpcc7942_0244: glgP - Glycogen/starch/alpha-glucan phosphorylase, at 238,622 to 241,156
glgP
Position (kb) 238
239 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 237.392 kb on + strand, within Synpcc7942_0242 at 237.489 kb on + strand, within Synpcc7942_0242 at 237.489 kb on + strand, within Synpcc7942_0242 at 237.498 kb on - strand, within Synpcc7942_0242 at 237.500 kb on + strand, within Synpcc7942_0242 at 237.542 kb on + strand, within Synpcc7942_0242 at 237.550 kb on - strand, within Synpcc7942_0242 at 237.557 kb on + strand, within Synpcc7942_0242 at 237.581 kb on - strand at 237.595 kb on - strand, within Synpcc7942_0242 at 237.597 kb on + strand, within Synpcc7942_0242 at 237.619 kb on + strand, within Synpcc7942_0242 at 237.634 kb on - strand, within Synpcc7942_0242 at 237.636 kb on - strand, within Synpcc7942_0242 at 237.645 kb on + strand, within Synpcc7942_0242 at 237.652 kb on + strand, within Synpcc7942_0242 at 237.660 kb on - strand, within Synpcc7942_0242 at 237.680 kb on + strand, within Synpcc7942_0242 at 237.695 kb on - strand, within Synpcc7942_0242 at 237.706 kb on - strand at 237.709 kb on + strand, within Synpcc7942_0242 at 237.717 kb on - strand, within Synpcc7942_0242 at 237.741 kb on + strand, within Synpcc7942_0242 at 237.742 kb on + strand, within Synpcc7942_0242 at 237.782 kb on - strand, within Synpcc7942_0242 at 237.791 kb on - strand, within Synpcc7942_0242 at 237.825 kb on - strand, within Synpcc7942_0242 at 237.839 kb on + strand, within Synpcc7942_0242 at 237.839 kb on + strand, within Synpcc7942_0242 at 237.886 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.895 kb on + strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.903 kb on - strand, within Synpcc7942_0242 at 237.916 kb on - strand, within Synpcc7942_0242 at 237.921 kb on - strand, within Synpcc7942_0242 at 237.921 kb on - strand, within Synpcc7942_0242 at 237.972 kb on + strand, within Synpcc7942_0242 at 237.973 kb on + strand, within Synpcc7942_0242 at 237.973 kb on + strand, within Synpcc7942_0242 at 237.981 kb on - strand, within Synpcc7942_0242 at 237.985 kb on + strand, within Synpcc7942_0242 at 237.988 kb on - strand, within Synpcc7942_0242 at 238.069 kb on + strand at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.069 kb on + strand, within Synpcc7942_0242 at 238.077 kb on - strand, within Synpcc7942_0242 at 238.077 kb on - strand, within Synpcc7942_0242 at 238.080 kb on + strand, within Synpcc7942_0242 at 238.109 kb on - strand, within Synpcc7942_0242 at 238.131 kb on - strand, within Synpcc7942_0242 at 238.134 kb on + strand, within Synpcc7942_0242 at 238.134 kb on + strand, within Synpcc7942_0242 at 238.142 kb on - strand, within Synpcc7942_0242 at 238.142 kb on - strand, within Synpcc7942_0242 at 238.142 kb on - strand, within Synpcc7942_0242 at 238.156 kb on + strand, within Synpcc7942_0242 at 238.156 kb on - strand, within Synpcc7942_0242 at 238.254 kb on + strand at 238.254 kb on + strand at 238.254 kb on + strand at 238.254 kb on + strand at 238.262 kb on - strand at 238.262 kb on - strand at 238.262 kb on - strand at 238.262 kb on - strand at 238.272 kb on + strand at 238.273 kb on + strand at 238.275 kb on - strand at 238.278 kb on + strand at 238.342 kb on - strand at 238.344 kb on - strand at 238.358 kb on + strand at 238.395 kb on - strand, within hliC at 238.478 kb on - strand, within hliC at 238.643 kb on + strand at 238.648 kb on + strand at 238.651 kb on - strand at 238.651 kb on - strand at 238.661 kb on - strand at 238.662 kb on + strand at 238.667 kb on + strand at 238.670 kb on - strand at 238.709 kb on - strand at 238.709 kb on - strand at 238.709 kb on - strand at 238.725 kb on + strand at 238.725 kb on + strand at 238.727 kb on + strand at 238.733 kb on - strand at 238.802 kb on + strand at 238.805 kb on - strand at 238.823 kb on + strand at 238.861 kb on - strand at 238.877 kb on - strand, within glgP at 238.883 kb on - strand, within glgP at 238.884 kb on + strand, within glgP at 238.897 kb on - strand, within glgP at 238.899 kb on + strand, within glgP at 238.910 kb on + strand, within glgP at 238.915 kb on - strand, within glgP at 238.918 kb on - strand, within glgP at 238.918 kb on - strand, within glgP at 238.918 kb on - strand, within glgP at 238.954 kb on - strand, within glgP at 238.959 kb on - strand, within glgP at 238.964 kb on - strand, within glgP at 238.964 kb on - strand, within glgP at 238.978 kb on - strand, within glgP at 239.035 kb on - strand, within glgP at 239.106 kb on - strand, within glgP at 239.107 kb on - strand, within glgP at 239.126 kb on + strand, within glgP at 239.136 kb on + strand, within glgP at 239.144 kb on - strand, within glgP at 239.166 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.225 kb on + strand, within glgP at 239.233 kb on - strand, within glgP at 239.233 kb on - strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.297 kb on + strand, within glgP at 239.304 kb on + strand, within glgP at 239.305 kb on - strand, within glgP at 239.305 kb on - strand, within glgP at 239.305 kb on - strand, within glgP at 239.305 kb on - strand, within glgP at 239.334 kb on - strand, within glgP at 239.341 kb on + strand, within glgP at 239.341 kb on + strand, within glgP at 239.349 kb on - strand, within glgP at 239.349 kb on - strand, within glgP at 239.373 kb on + strand, within glgP at 239.375 kb on + strand, within glgP at 239.375 kb on + strand, within glgP at 239.383 kb on + strand, within glgP at 239.383 kb on - strand, within glgP at 239.383 kb on - strand, within glgP at 239.383 kb on - strand, within glgP at 239.389 kb on + strand, within glgP at 239.393 kb on + strand, within glgP at 239.397 kb on - strand, within glgP at 239.401 kb on - strand, within glgP at 239.408 kb on + strand, within glgP at 239.496 kb on - strand, within glgP at 239.501 kb on + strand, within glgP
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 237,392 + Synpcc7942_0242 0.20 -2.2 237,489 + Synpcc7942_0242 0.29 -2.0 237,489 + Synpcc7942_0242 0.29 -1.6 237,498 - Synpcc7942_0242 0.30 -1.7 237,500 + Synpcc7942_0242 0.30 -0.6 237,542 + Synpcc7942_0242 0.34 +0.2 237,550 - Synpcc7942_0242 0.35 +0.0 237,557 + Synpcc7942_0242 0.35 +1.3 237,581 - -0.6 237,595 - Synpcc7942_0242 0.39 -0.5 237,597 + Synpcc7942_0242 0.39 -2.3 237,619 + Synpcc7942_0242 0.41 -1.0 237,634 - Synpcc7942_0242 0.42 -1.4 237,636 - Synpcc7942_0242 0.42 +0.4 237,645 + Synpcc7942_0242 0.43 -1.6 237,652 + Synpcc7942_0242 0.44 -0.4 237,660 - Synpcc7942_0242 0.45 -2.1 237,680 + Synpcc7942_0242 0.46 +0.3 237,695 - Synpcc7942_0242 0.48 -3.6 237,706 - -0.0 237,709 + Synpcc7942_0242 0.49 -1.3 237,717 - Synpcc7942_0242 0.50 -1.1 237,741 + Synpcc7942_0242 0.52 -3.5 237,742 + Synpcc7942_0242 0.52 +2.4 237,782 - Synpcc7942_0242 0.55 -2.1 237,791 - Synpcc7942_0242 0.56 -1.9 237,825 - Synpcc7942_0242 0.59 -0.2 237,839 + Synpcc7942_0242 0.61 -0.5 237,839 + Synpcc7942_0242 0.61 -0.9 237,886 + Synpcc7942_0242 0.65 -0.6 237,895 + Synpcc7942_0242 0.66 +0.3 237,895 + Synpcc7942_0242 0.66 -0.4 237,895 + Synpcc7942_0242 0.66 -1.1 237,895 + Synpcc7942_0242 0.66 -0.2 237,895 + Synpcc7942_0242 0.66 +0.4 237,903 - Synpcc7942_0242 0.66 -1.7 237,903 - Synpcc7942_0242 0.66 -1.4 237,903 - Synpcc7942_0242 0.66 -0.6 237,903 - Synpcc7942_0242 0.66 -1.7 237,903 - Synpcc7942_0242 0.66 -1.3 237,903 - Synpcc7942_0242 0.66 -2.9 237,903 - Synpcc7942_0242 0.66 +1.2 237,903 - Synpcc7942_0242 0.66 -1.6 237,916 - Synpcc7942_0242 0.68 -1.7 237,921 - Synpcc7942_0242 0.68 -1.6 237,921 - Synpcc7942_0242 0.68 -1.4 237,972 + Synpcc7942_0242 0.73 -0.5 237,973 + Synpcc7942_0242 0.73 -1.5 237,973 + Synpcc7942_0242 0.73 -0.7 237,981 - Synpcc7942_0242 0.73 -1.3 237,985 + Synpcc7942_0242 0.74 +0.8 237,988 - Synpcc7942_0242 0.74 +0.1 238,069 + -0.6 238,069 + Synpcc7942_0242 0.81 +0.6 238,069 + Synpcc7942_0242 0.81 -1.9 238,069 + Synpcc7942_0242 0.81 -0.0 238,069 + Synpcc7942_0242 0.81 -1.0 238,069 + Synpcc7942_0242 0.81 -1.1 238,077 - Synpcc7942_0242 0.82 -2.3 238,077 - Synpcc7942_0242 0.82 -0.6 238,080 + Synpcc7942_0242 0.82 +1.1 238,109 - Synpcc7942_0242 0.85 -0.7 238,131 - Synpcc7942_0242 0.87 -1.5 238,134 + Synpcc7942_0242 0.87 -2.1 238,134 + Synpcc7942_0242 0.87 -1.4 238,142 - Synpcc7942_0242 0.88 -0.9 238,142 - Synpcc7942_0242 0.88 -0.2 238,142 - Synpcc7942_0242 0.88 -2.6 238,156 + Synpcc7942_0242 0.89 -1.2 238,156 - Synpcc7942_0242 0.89 -3.0 238,254 + +0.4 238,254 + +0.6 238,254 + -1.7 238,254 + -0.4 238,262 - -1.8 238,262 - -0.2 238,262 - -1.2 238,262 - -0.7 238,272 + -0.5 238,273 + +0.4 238,275 - +0.6 238,278 + -2.3 238,342 - -2.0 238,344 - -2.5 238,358 + -2.1 238,395 - hliC Synpcc7942_0243 0.11 -2.8 238,478 - hliC Synpcc7942_0243 0.69 -0.4 238,643 + -0.7 238,648 + +2.6 238,651 - -1.6 238,651 - -1.0 238,661 - +1.0 238,662 + -0.0 238,667 + +1.8 238,670 - -2.7 238,709 - +0.3 238,709 - +0.1 238,709 - +0.3 238,725 + -2.7 238,725 + -0.9 238,727 + -0.7 238,733 - -1.7 238,802 + -1.3 238,805 - +1.0 238,823 + -1.6 238,861 - +3.4 238,877 - glgP Synpcc7942_0244 0.10 +2.8 238,883 - glgP Synpcc7942_0244 0.10 -0.1 238,884 + glgP Synpcc7942_0244 0.10 +0.6 238,897 - glgP Synpcc7942_0244 0.11 -2.5 238,899 + glgP Synpcc7942_0244 0.11 -0.3 238,910 + glgP Synpcc7942_0244 0.11 -2.3 238,915 - glgP Synpcc7942_0244 0.12 -1.6 238,918 - glgP Synpcc7942_0244 0.12 +0.3 238,918 - glgP Synpcc7942_0244 0.12 +2.4 238,918 - glgP Synpcc7942_0244 0.12 +1.0 238,954 - glgP Synpcc7942_0244 0.13 -1.6 238,959 - glgP Synpcc7942_0244 0.13 +2.1 238,964 - glgP Synpcc7942_0244 0.13 -0.0 238,964 - glgP Synpcc7942_0244 0.13 -2.6 238,978 - glgP Synpcc7942_0244 0.14 -3.4 239,035 - glgP Synpcc7942_0244 0.16 -0.6 239,106 - glgP Synpcc7942_0244 0.19 -0.8 239,107 - glgP Synpcc7942_0244 0.19 -0.7 239,126 + glgP Synpcc7942_0244 0.20 -0.2 239,136 + glgP Synpcc7942_0244 0.20 -0.4 239,144 - glgP Synpcc7942_0244 0.21 +3.4 239,166 + glgP Synpcc7942_0244 0.21 +0.3 239,225 + glgP Synpcc7942_0244 0.24 -2.7 239,225 + glgP Synpcc7942_0244 0.24 -2.2 239,225 + glgP Synpcc7942_0244 0.24 -0.4 239,225 + glgP Synpcc7942_0244 0.24 +1.0 239,225 + glgP Synpcc7942_0244 0.24 -2.0 239,225 + glgP Synpcc7942_0244 0.24 -1.1 239,225 + glgP Synpcc7942_0244 0.24 -1.6 239,225 + glgP Synpcc7942_0244 0.24 +0.8 239,233 - glgP Synpcc7942_0244 0.24 +0.6 239,233 - glgP Synpcc7942_0244 0.24 +0.3 239,297 + glgP Synpcc7942_0244 0.27 +1.2 239,297 + glgP Synpcc7942_0244 0.27 +1.2 239,297 + glgP Synpcc7942_0244 0.27 -1.0 239,297 + glgP Synpcc7942_0244 0.27 -3.4 239,297 + glgP Synpcc7942_0244 0.27 +1.2 239,304 + glgP Synpcc7942_0244 0.27 -1.0 239,305 - glgP Synpcc7942_0244 0.27 +1.7 239,305 - glgP Synpcc7942_0244 0.27 -2.9 239,305 - glgP Synpcc7942_0244 0.27 -1.1 239,305 - glgP Synpcc7942_0244 0.27 +0.5 239,334 - glgP Synpcc7942_0244 0.28 +0.4 239,341 + glgP Synpcc7942_0244 0.28 +1.7 239,341 + glgP Synpcc7942_0244 0.28 +2.1 239,349 - glgP Synpcc7942_0244 0.29 -4.1 239,349 - glgP Synpcc7942_0244 0.29 +0.3 239,373 + glgP Synpcc7942_0244 0.30 +1.6 239,375 + glgP Synpcc7942_0244 0.30 -1.1 239,375 + glgP Synpcc7942_0244 0.30 +2.4 239,383 + glgP Synpcc7942_0244 0.30 -1.2 239,383 - glgP Synpcc7942_0244 0.30 +1.2 239,383 - glgP Synpcc7942_0244 0.30 +3.4 239,383 - glgP Synpcc7942_0244 0.30 -2.3 239,389 + glgP Synpcc7942_0244 0.30 -3.8 239,393 + glgP Synpcc7942_0244 0.30 +3.2 239,397 - glgP Synpcc7942_0244 0.31 -1.1 239,401 - glgP Synpcc7942_0244 0.31 -1.4 239,408 + glgP Synpcc7942_0244 0.31 +3.2 239,496 - glgP Synpcc7942_0244 0.34 +3.9 239,501 + glgP Synpcc7942_0244 0.35 -2.3
Or see this region's nucleotide sequence