Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0191 and ycf60 are separated by 89 nucleotides ycf60 and Synpcc7942_0193 are separated by 60 nucleotides Synpcc7942_0193 and polA are separated by 183 nucleotides
Synpcc7942_0191: Synpcc7942_0191 - Serine--glyoxylate transaminase, at 190,472 to 191,620
_0191
Synpcc7942_0192: ycf60 - conserved hypothetical protein YCF60, at 191,710 to 192,186
ycf60
Synpcc7942_0193: Synpcc7942_0193 - hypothetical protein, at 192,247 to 192,471
_0193
Synpcc7942_0194: polA - DNA polymerase I, at 192,655 to 195,516
polA
Position (kb) 192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 191.661 kb on + strand at 191.710 kb on + strand at 191.806 kb on - strand, within ycf60 at 191.818 kb on - strand, within ycf60 at 191.832 kb on - strand, within ycf60 at 191.859 kb on + strand, within ycf60 at 191.866 kb on + strand, within ycf60 at 191.866 kb on + strand, within ycf60 at 191.867 kb on - strand, within ycf60 at 191.874 kb on - strand, within ycf60 at 191.941 kb on - strand, within ycf60 at 192.062 kb on - strand, within ycf60 at 192.097 kb on + strand, within ycf60 at 192.098 kb on - strand, within ycf60 at 192.165 kb on + strand at 192.165 kb on + strand at 192.173 kb on - strand at 192.174 kb on - strand at 192.190 kb on - strand at 192.190 kb on - strand at 192.191 kb on + strand at 192.191 kb on + strand at 192.199 kb on - strand at 192.211 kb on - strand at 192.220 kb on + strand at 192.221 kb on - strand at 192.231 kb on + strand at 192.249 kb on + strand at 192.328 kb on + strand, within Synpcc7942_0193 at 192.328 kb on + strand, within Synpcc7942_0193 at 192.335 kb on - strand, within Synpcc7942_0193 at 192.336 kb on - strand, within Synpcc7942_0193 at 192.369 kb on + strand, within Synpcc7942_0193 at 192.377 kb on - strand, within Synpcc7942_0193 at 192.478 kb on + strand at 192.548 kb on + strand at 192.548 kb on + strand at 192.548 kb on + strand at 192.556 kb on - strand at 192.570 kb on - strand at 192.571 kb on - strand at 192.582 kb on + strand at 192.583 kb on - strand at 192.583 kb on - strand at 192.597 kb on + strand at 192.605 kb on - strand at 192.673 kb on + strand at 192.673 kb on + strand at 192.681 kb on - strand at 192.698 kb on - strand at 192.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 191,661 + +0.2 191,710 + +0.2 191,806 - ycf60 Synpcc7942_0192 0.20 -1.0 191,818 - ycf60 Synpcc7942_0192 0.23 -1.2 191,832 - ycf60 Synpcc7942_0192 0.26 -0.2 191,859 + ycf60 Synpcc7942_0192 0.31 +1.4 191,866 + ycf60 Synpcc7942_0192 0.33 -0.0 191,866 + ycf60 Synpcc7942_0192 0.33 -2.2 191,867 - ycf60 Synpcc7942_0192 0.33 +0.4 191,874 - ycf60 Synpcc7942_0192 0.34 -1.3 191,941 - ycf60 Synpcc7942_0192 0.48 -1.0 192,062 - ycf60 Synpcc7942_0192 0.74 -0.6 192,097 + ycf60 Synpcc7942_0192 0.81 +0.9 192,098 - ycf60 Synpcc7942_0192 0.81 -0.2 192,165 + -1.0 192,165 + -0.2 192,173 - -0.3 192,174 - -2.5 192,190 - +2.0 192,190 - +1.9 192,191 + -0.4 192,191 + -0.2 192,199 - +0.2 192,211 - -2.4 192,220 + +1.0 192,221 - -0.2 192,231 + -2.9 192,249 + +0.9 192,328 + Synpcc7942_0193 0.36 -0.8 192,328 + Synpcc7942_0193 0.36 -2.0 192,335 - Synpcc7942_0193 0.39 -3.9 192,336 - Synpcc7942_0193 0.40 -1.0 192,369 + Synpcc7942_0193 0.54 -2.5 192,377 - Synpcc7942_0193 0.58 -3.7 192,478 + -0.6 192,548 + -2.9 192,548 + -0.3 192,548 + -0.7 192,556 - -0.4 192,570 - -1.3 192,571 - +1.1 192,582 + -2.2 192,583 - -0.3 192,583 - +2.0 192,597 + -1.3 192,605 - -0.7 192,673 + +0.9 192,673 + -2.7 192,681 - +2.2 192,698 - -1.1 192,700 - -1.9
Or see this region's nucleotide sequence