Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0134 and rapQ overlap by 37 nucleotides rapQ and Synpcc7942_0136 are separated by 54 nucleotides Synpcc7942_0136 and hemH are separated by 101 nucleotides
Synpcc7942_0134: Synpcc7942_0134 - hypothetical protein, at 134,745 to 136,052
_0134
Synpcc7942_0135: rapQ - Methylase involved in ubiquinone/menaquinone biosynthesis-like, at 136,016 to 136,651
rapQ
Synpcc7942_0136: Synpcc7942_0136 - phage integrase, at 136,706 to 138,013
_0136
Synpcc7942_0137: hemH - ferrochelatase, at 138,115 to 139,278
hemH
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 136.038 kb on - strand at 136.087 kb on + strand, within rapQ at 136.095 kb on - strand, within rapQ at 136.095 kb on - strand, within rapQ at 136.095 kb on - strand, within rapQ at 136.101 kb on + strand, within rapQ at 136.109 kb on - strand, within rapQ at 136.129 kb on - strand, within rapQ at 136.146 kb on + strand, within rapQ at 136.146 kb on + strand, within rapQ at 136.151 kb on - strand, within rapQ at 136.160 kb on - strand, within rapQ at 136.162 kb on + strand, within rapQ at 136.162 kb on + strand, within rapQ at 136.170 kb on - strand, within rapQ at 136.170 kb on - strand, within rapQ at 136.170 kb on - strand, within rapQ at 136.170 kb on - strand, within rapQ at 136.185 kb on + strand, within rapQ at 136.242 kb on + strand, within rapQ at 136.242 kb on + strand, within rapQ at 136.250 kb on - strand, within rapQ at 136.304 kb on - strand, within rapQ at 136.306 kb on + strand, within rapQ at 136.306 kb on + strand, within rapQ at 136.306 kb on + strand, within rapQ at 136.306 kb on + strand, within rapQ at 136.306 kb on + strand, within rapQ at 136.314 kb on - strand, within rapQ at 136.314 kb on - strand, within rapQ at 136.314 kb on - strand, within rapQ at 136.321 kb on + strand, within rapQ at 136.324 kb on - strand, within rapQ at 136.325 kb on - strand, within rapQ at 136.335 kb on - strand, within rapQ at 136.350 kb on + strand, within rapQ at 136.362 kb on + strand, within rapQ at 136.364 kb on - strand, within rapQ at 136.370 kb on - strand, within rapQ at 136.370 kb on - strand, within rapQ at 136.370 kb on - strand, within rapQ at 136.370 kb on - strand, within rapQ at 136.382 kb on - strand, within rapQ at 136.404 kb on - strand, within rapQ at 136.404 kb on - strand, within rapQ at 136.404 kb on - strand, within rapQ at 136.406 kb on - strand, within rapQ at 136.433 kb on + strand, within rapQ at 136.463 kb on - strand, within rapQ at 136.465 kb on + strand, within rapQ at 136.473 kb on - strand, within rapQ at 136.475 kb on + strand, within rapQ at 136.488 kb on - strand, within rapQ at 136.488 kb on - strand, within rapQ at 136.491 kb on + strand, within rapQ at 136.505 kb on + strand, within rapQ at 136.505 kb on + strand, within rapQ at 136.506 kb on - strand, within rapQ at 136.506 kb on - strand, within rapQ at 136.506 kb on - strand, within rapQ at 136.506 kb on - strand, within rapQ at 136.523 kb on - strand, within rapQ at 136.552 kb on - strand, within rapQ at 136.555 kb on + strand, within rapQ at 136.557 kb on + strand, within rapQ at 136.565 kb on - strand, within rapQ at 136.569 kb on + strand, within rapQ at 136.571 kb on + strand, within rapQ at 136.584 kb on - strand, within rapQ at 136.607 kb on - strand at 136.617 kb on - strand at 136.667 kb on - strand at 136.693 kb on + strand at 136.744 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.761 kb on + strand at 136.769 kb on - strand at 136.769 kb on - strand at 136.769 kb on - strand at 136.771 kb on + strand at 136.779 kb on - strand at 136.794 kb on - strand at 136.796 kb on + strand at 136.866 kb on + strand, within Synpcc7942_0136 at 136.867 kb on - strand, within Synpcc7942_0136 at 136.867 kb on - strand, within Synpcc7942_0136 at 136.873 kb on - strand, within Synpcc7942_0136 at 136.873 kb on - strand, within Synpcc7942_0136 at 136.897 kb on + strand, within Synpcc7942_0136 at 136.902 kb on + strand, within Synpcc7942_0136 at 136.902 kb on + strand, within Synpcc7942_0136 at 136.910 kb on - strand, within Synpcc7942_0136 at 136.910 kb on - strand, within Synpcc7942_0136 at 136.917 kb on + strand, within Synpcc7942_0136 at 136.922 kb on + strand, within Synpcc7942_0136 at 136.965 kb on + strand, within Synpcc7942_0136 at 136.965 kb on + strand, within Synpcc7942_0136 at 136.976 kb on + strand, within Synpcc7942_0136 at 136.981 kb on + strand, within Synpcc7942_0136 at 136.981 kb on + strand, within Synpcc7942_0136 at 136.998 kb on + strand, within Synpcc7942_0136 at 137.014 kb on + strand, within Synpcc7942_0136 at 137.076 kb on - strand, within Synpcc7942_0136 at 137.076 kb on - strand, within Synpcc7942_0136 at 137.127 kb on - strand, within Synpcc7942_0136 at 137.134 kb on + strand, within Synpcc7942_0136 at 137.148 kb on + strand, within Synpcc7942_0136 at 137.188 kb on + strand, within Synpcc7942_0136 at 137.203 kb on + strand, within Synpcc7942_0136 at 137.203 kb on + strand, within Synpcc7942_0136 at 137.203 kb on + strand, within Synpcc7942_0136 at 137.214 kb on - strand, within Synpcc7942_0136 at 137.217 kb on + strand, within Synpcc7942_0136 at 137.217 kb on + strand, within Synpcc7942_0136 at 137.229 kb on + strand, within Synpcc7942_0136 at 137.229 kb on + strand, within Synpcc7942_0136 at 137.229 kb on + strand, within Synpcc7942_0136 at 137.234 kb on + strand, within Synpcc7942_0136 at 137.237 kb on - strand, within Synpcc7942_0136 at 137.239 kb on + strand, within Synpcc7942_0136 at 137.239 kb on + strand, within Synpcc7942_0136 at 137.242 kb on - strand, within Synpcc7942_0136 at 137.244 kb on + strand, within Synpcc7942_0136 at 137.252 kb on - strand, within Synpcc7942_0136 at 137.252 kb on - strand, within Synpcc7942_0136 at 137.263 kb on + strand, within Synpcc7942_0136 at 137.263 kb on + strand, within Synpcc7942_0136 at 137.272 kb on + strand, within Synpcc7942_0136 at 137.287 kb on - strand, within Synpcc7942_0136 at 137.287 kb on - strand, within Synpcc7942_0136 at 137.319 kb on + strand, within Synpcc7942_0136 at 137.351 kb on - strand, within Synpcc7942_0136 at 137.366 kb on - strand, within Synpcc7942_0136 at 137.377 kb on + strand, within Synpcc7942_0136 at 137.377 kb on + strand, within Synpcc7942_0136 at 137.399 kb on + strand, within Synpcc7942_0136 at 137.419 kb on + strand, within Synpcc7942_0136 at 137.466 kb on + strand at 137.466 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.469 kb on + strand, within Synpcc7942_0136 at 137.474 kb on - strand, within Synpcc7942_0136 at 137.477 kb on - strand, within Synpcc7942_0136 at 137.477 kb on - strand, within Synpcc7942_0136 at 137.477 kb on - strand, within Synpcc7942_0136 at 137.477 kb on - strand, within Synpcc7942_0136 at 137.484 kb on + strand, within Synpcc7942_0136 at 137.489 kb on + strand, within Synpcc7942_0136 at 137.497 kb on - strand, within Synpcc7942_0136 at 137.532 kb on + strand, within Synpcc7942_0136 at 137.549 kb on - strand, within Synpcc7942_0136 at 137.551 kb on + strand, within Synpcc7942_0136 at 137.559 kb on + strand, within Synpcc7942_0136 at 137.559 kb on + strand, within Synpcc7942_0136 at 137.580 kb on + strand, within Synpcc7942_0136 at 137.580 kb on + strand, within Synpcc7942_0136 at 137.609 kb on + strand, within Synpcc7942_0136 at 137.629 kb on - strand, within Synpcc7942_0136 at 137.761 kb on - strand, within Synpcc7942_0136 at 137.775 kb on + strand, within Synpcc7942_0136 at 137.775 kb on + strand, within Synpcc7942_0136 at 137.775 kb on + strand, within Synpcc7942_0136 at 137.796 kb on - strand, within Synpcc7942_0136 at 137.824 kb on + strand, within Synpcc7942_0136 at 137.832 kb on - strand, within Synpcc7942_0136 at 137.842 kb on + strand, within Synpcc7942_0136 at 137.850 kb on - strand, within Synpcc7942_0136 at 137.877 kb on + strand, within Synpcc7942_0136 at 137.904 kb on - strand at 137.904 kb on - strand at 137.925 kb on - strand at 137.984 kb on + strand at 137.984 kb on + strand at 137.992 kb on - strand at 137.992 kb on - strand at 137.992 kb on - strand at 137.992 kb on - strand at 137.997 kb on - strand at 138.003 kb on - strand at 138.039 kb on + strand at 138.075 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 136,038 - -2.1 136,087 + rapQ Synpcc7942_0135 0.11 -0.6 136,095 - rapQ Synpcc7942_0135 0.12 -1.4 136,095 - rapQ Synpcc7942_0135 0.12 -0.1 136,095 - rapQ Synpcc7942_0135 0.12 +1.8 136,101 + rapQ Synpcc7942_0135 0.13 -1.7 136,109 - rapQ Synpcc7942_0135 0.15 -4.6 136,129 - rapQ Synpcc7942_0135 0.18 -0.4 136,146 + rapQ Synpcc7942_0135 0.20 -1.2 136,146 + rapQ Synpcc7942_0135 0.20 +1.6 136,151 - rapQ Synpcc7942_0135 0.21 -1.1 136,160 - rapQ Synpcc7942_0135 0.23 -0.9 136,162 + rapQ Synpcc7942_0135 0.23 +0.1 136,162 + rapQ Synpcc7942_0135 0.23 -1.9 136,170 - rapQ Synpcc7942_0135 0.24 +0.4 136,170 - rapQ Synpcc7942_0135 0.24 -0.0 136,170 - rapQ Synpcc7942_0135 0.24 +0.4 136,170 - rapQ Synpcc7942_0135 0.24 -2.8 136,185 + rapQ Synpcc7942_0135 0.27 +0.0 136,242 + rapQ Synpcc7942_0135 0.36 +1.1 136,242 + rapQ Synpcc7942_0135 0.36 -0.1 136,250 - rapQ Synpcc7942_0135 0.37 -2.8 136,304 - rapQ Synpcc7942_0135 0.45 +0.8 136,306 + rapQ Synpcc7942_0135 0.46 +1.0 136,306 + rapQ Synpcc7942_0135 0.46 -2.4 136,306 + rapQ Synpcc7942_0135 0.46 -1.0 136,306 + rapQ Synpcc7942_0135 0.46 +0.6 136,306 + rapQ Synpcc7942_0135 0.46 -1.1 136,314 - rapQ Synpcc7942_0135 0.47 -2.0 136,314 - rapQ Synpcc7942_0135 0.47 +0.8 136,314 - rapQ Synpcc7942_0135 0.47 +0.5 136,321 + rapQ Synpcc7942_0135 0.48 -0.0 136,324 - rapQ Synpcc7942_0135 0.48 +1.7 136,325 - rapQ Synpcc7942_0135 0.49 -0.2 136,335 - rapQ Synpcc7942_0135 0.50 -2.7 136,350 + rapQ Synpcc7942_0135 0.53 -2.0 136,362 + rapQ Synpcc7942_0135 0.54 -3.4 136,364 - rapQ Synpcc7942_0135 0.55 +0.2 136,370 - rapQ Synpcc7942_0135 0.56 +1.4 136,370 - rapQ Synpcc7942_0135 0.56 +1.4 136,370 - rapQ Synpcc7942_0135 0.56 -1.8 136,370 - rapQ Synpcc7942_0135 0.56 -0.1 136,382 - rapQ Synpcc7942_0135 0.58 +1.5 136,404 - rapQ Synpcc7942_0135 0.61 -0.2 136,404 - rapQ Synpcc7942_0135 0.61 +1.9 136,404 - rapQ Synpcc7942_0135 0.61 -1.7 136,406 - rapQ Synpcc7942_0135 0.61 -1.4 136,433 + rapQ Synpcc7942_0135 0.66 -0.4 136,463 - rapQ Synpcc7942_0135 0.70 -0.3 136,465 + rapQ Synpcc7942_0135 0.71 -0.6 136,473 - rapQ Synpcc7942_0135 0.72 +0.6 136,475 + rapQ Synpcc7942_0135 0.72 +1.8 136,488 - rapQ Synpcc7942_0135 0.74 -1.8 136,488 - rapQ Synpcc7942_0135 0.74 +1.8 136,491 + rapQ Synpcc7942_0135 0.75 +2.3 136,505 + rapQ Synpcc7942_0135 0.77 +1.2 136,505 + rapQ Synpcc7942_0135 0.77 -2.7 136,506 - rapQ Synpcc7942_0135 0.77 -2.0 136,506 - rapQ Synpcc7942_0135 0.77 +2.9 136,506 - rapQ Synpcc7942_0135 0.77 +1.8 136,506 - rapQ Synpcc7942_0135 0.77 +0.3 136,523 - rapQ Synpcc7942_0135 0.80 +0.3 136,552 - rapQ Synpcc7942_0135 0.84 -1.5 136,555 + rapQ Synpcc7942_0135 0.85 +0.6 136,557 + rapQ Synpcc7942_0135 0.85 -2.1 136,565 - rapQ Synpcc7942_0135 0.86 -0.5 136,569 + rapQ Synpcc7942_0135 0.87 -0.2 136,571 + rapQ Synpcc7942_0135 0.87 -1.2 136,584 - rapQ Synpcc7942_0135 0.89 -0.8 136,607 - +0.6 136,617 - -0.2 136,667 - +2.4 136,693 + +1.6 136,744 + +1.8 136,761 + +0.6 136,761 + -1.1 136,761 + -0.2 136,761 + -1.0 136,761 + -2.3 136,761 + +1.5 136,761 + -0.0 136,761 + -1.0 136,761 + +0.1 136,761 + -0.6 136,769 - -0.4 136,769 - -2.3 136,769 - +0.2 136,771 + -0.2 136,779 - -1.8 136,794 - -0.4 136,796 + +0.1 136,866 + Synpcc7942_0136 0.12 +0.6 136,867 - Synpcc7942_0136 0.12 -0.4 136,867 - Synpcc7942_0136 0.12 -1.0 136,873 - Synpcc7942_0136 0.13 -2.2 136,873 - Synpcc7942_0136 0.13 -1.8 136,897 + Synpcc7942_0136 0.15 -1.8 136,902 + Synpcc7942_0136 0.15 -3.0 136,902 + Synpcc7942_0136 0.15 +0.5 136,910 - Synpcc7942_0136 0.16 -1.3 136,910 - Synpcc7942_0136 0.16 -0.4 136,917 + Synpcc7942_0136 0.16 -1.3 136,922 + Synpcc7942_0136 0.17 -3.2 136,965 + Synpcc7942_0136 0.20 -0.4 136,965 + Synpcc7942_0136 0.20 -0.9 136,976 + Synpcc7942_0136 0.21 -1.8 136,981 + Synpcc7942_0136 0.21 -1.5 136,981 + Synpcc7942_0136 0.21 -0.3 136,998 + Synpcc7942_0136 0.22 -1.1 137,014 + Synpcc7942_0136 0.24 +0.7 137,076 - Synpcc7942_0136 0.28 -0.3 137,076 - Synpcc7942_0136 0.28 -0.2 137,127 - Synpcc7942_0136 0.32 -2.8 137,134 + Synpcc7942_0136 0.33 -2.2 137,148 + Synpcc7942_0136 0.34 -2.5 137,188 + Synpcc7942_0136 0.37 -0.8 137,203 + Synpcc7942_0136 0.38 -2.6 137,203 + Synpcc7942_0136 0.38 -0.8 137,203 + Synpcc7942_0136 0.38 -1.5 137,214 - Synpcc7942_0136 0.39 -1.1 137,217 + Synpcc7942_0136 0.39 -2.4 137,217 + Synpcc7942_0136 0.39 -1.6 137,229 + Synpcc7942_0136 0.40 -2.8 137,229 + Synpcc7942_0136 0.40 -0.0 137,229 + Synpcc7942_0136 0.40 +1.0 137,234 + Synpcc7942_0136 0.40 +0.5 137,237 - Synpcc7942_0136 0.41 -1.0 137,239 + Synpcc7942_0136 0.41 +0.5 137,239 + Synpcc7942_0136 0.41 -1.2 137,242 - Synpcc7942_0136 0.41 -2.0 137,244 + Synpcc7942_0136 0.41 -1.1 137,252 - Synpcc7942_0136 0.42 -0.2 137,252 - Synpcc7942_0136 0.42 -2.0 137,263 + Synpcc7942_0136 0.43 -2.0 137,263 + Synpcc7942_0136 0.43 -1.6 137,272 + Synpcc7942_0136 0.43 -0.8 137,287 - Synpcc7942_0136 0.44 -2.7 137,287 - Synpcc7942_0136 0.44 +1.6 137,319 + Synpcc7942_0136 0.47 -1.6 137,351 - Synpcc7942_0136 0.49 -3.4 137,366 - Synpcc7942_0136 0.50 -1.6 137,377 + Synpcc7942_0136 0.51 -0.8 137,377 + Synpcc7942_0136 0.51 -3.0 137,399 + Synpcc7942_0136 0.53 -2.3 137,419 + Synpcc7942_0136 0.55 -0.1 137,466 + -0.6 137,466 + Synpcc7942_0136 0.58 -1.5 137,469 + Synpcc7942_0136 0.58 -1.1 137,469 + Synpcc7942_0136 0.58 -2.2 137,469 + Synpcc7942_0136 0.58 -0.8 137,469 + Synpcc7942_0136 0.58 -1.3 137,469 + Synpcc7942_0136 0.58 -0.8 137,469 + Synpcc7942_0136 0.58 +0.2 137,469 + Synpcc7942_0136 0.58 -1.4 137,474 - Synpcc7942_0136 0.59 -1.6 137,477 - Synpcc7942_0136 0.59 -1.2 137,477 - Synpcc7942_0136 0.59 -1.6 137,477 - Synpcc7942_0136 0.59 +2.4 137,477 - Synpcc7942_0136 0.59 -2.1 137,484 + Synpcc7942_0136 0.59 +0.8 137,489 + Synpcc7942_0136 0.60 -1.4 137,497 - Synpcc7942_0136 0.60 -2.8 137,532 + Synpcc7942_0136 0.63 -0.9 137,549 - Synpcc7942_0136 0.64 -2.7 137,551 + Synpcc7942_0136 0.65 -1.8 137,559 + Synpcc7942_0136 0.65 -0.8 137,559 + Synpcc7942_0136 0.65 -1.9 137,580 + Synpcc7942_0136 0.67 -2.4 137,580 + Synpcc7942_0136 0.67 -1.3 137,609 + Synpcc7942_0136 0.69 -0.8 137,629 - Synpcc7942_0136 0.71 -2.6 137,761 - Synpcc7942_0136 0.81 -0.2 137,775 + Synpcc7942_0136 0.82 +0.2 137,775 + Synpcc7942_0136 0.82 -0.3 137,775 + Synpcc7942_0136 0.82 -3.0 137,796 - Synpcc7942_0136 0.83 -0.2 137,824 + Synpcc7942_0136 0.85 -2.3 137,832 - Synpcc7942_0136 0.86 -1.4 137,842 + Synpcc7942_0136 0.87 -0.2 137,850 - Synpcc7942_0136 0.87 -0.1 137,877 + Synpcc7942_0136 0.90 -1.9 137,904 - -1.2 137,904 - +0.2 137,925 - -2.3 137,984 + -0.4 137,984 + +0.2 137,992 - -1.0 137,992 - +0.6 137,992 - -0.1 137,992 - +0.1 137,997 - +1.0 138,003 - -1.7 138,039 + +1.6 138,075 + -2.5
Or see this region's nucleotide sequence