Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0080

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0078 and ycf41 are separated by 74 nucleotidesycf41 and Synpcc7942_0080 are separated by 63 nucleotidesSynpcc7942_0080 and Synpcc7942_0081 are separated by 115 nucleotidesSynpcc7942_0081 and mdlB are separated by 68 nucleotides Synpcc7942_0078: Synpcc7942_0078 - hypothetical protein, at 76,614 to 77,063 _0078 Synpcc7942_0079: ycf41 - conserved hypothetical protein YCF41, at 77,138 to 77,584 ycf41 Synpcc7942_0080: Synpcc7942_0080 - probable ABC transporter permease protein, at 77,648 to 78,871 _0080 Synpcc7942_0081: Synpcc7942_0081 - RNA-binding S4, at 78,987 to 79,196 _0081 Synpcc7942_0082: mdlB - ATPase, at 79,265 to 81,013 mdlB Position (kb) 77 78 79Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 76.674 kb on + strand, within Synpcc7942_0078at 76.677 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strandat 76.743 kb on + strand, within Synpcc7942_0078at 76.743 kb on + strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.751 kb on - strand, within Synpcc7942_0078at 76.756 kb on - strand, within Synpcc7942_0078at 76.770 kb on + strand, within Synpcc7942_0078at 76.775 kb on + strand, within Synpcc7942_0078at 76.775 kb on + strand, within Synpcc7942_0078at 76.775 kb on + strand, within Synpcc7942_0078at 76.783 kb on - strand, within Synpcc7942_0078at 76.796 kb on + strand, within Synpcc7942_0078at 76.796 kb on + strand, within Synpcc7942_0078at 76.797 kb on + strand, within Synpcc7942_0078at 76.886 kb on + strandat 76.889 kb on - strand, within Synpcc7942_0078at 76.932 kb on - strand, within Synpcc7942_0078at 76.956 kb on - strand, within Synpcc7942_0078at 76.958 kb on - strand, within Synpcc7942_0078at 77.016 kb on + strand, within Synpcc7942_0078at 77.024 kb on - strandat 77.028 kb on + strandat 77.047 kb on + strandat 77.121 kb on + strandat 77.128 kb on - strandat 77.128 kb on - strandat 77.134 kb on - strandat 77.166 kb on - strandat 77.627 kb on + strandat 77.674 kb on + strandat 77.696 kb on + strandat 77.717 kb on - strandat 77.717 kb on - strandat 77.719 kb on + strandat 77.809 kb on + strand, within Synpcc7942_0080at 77.811 kb on - strand, within Synpcc7942_0080at 77.824 kb on + strand, within Synpcc7942_0080at 77.827 kb on - strand, within Synpcc7942_0080at 77.832 kb on - strand, within Synpcc7942_0080at 77.832 kb on - strand, within Synpcc7942_0080at 77.841 kb on + strand, within Synpcc7942_0080at 77.843 kb on + strand, within Synpcc7942_0080at 77.860 kb on - strand, within Synpcc7942_0080at 77.871 kb on + strand, within Synpcc7942_0080at 77.879 kb on - strand, within Synpcc7942_0080at 77.879 kb on - strand, within Synpcc7942_0080at 77.879 kb on - strand, within Synpcc7942_0080at 77.881 kb on + strand, within Synpcc7942_0080at 77.913 kb on + strand, within Synpcc7942_0080at 77.923 kb on + strand, within Synpcc7942_0080at 77.923 kb on + strand, within Synpcc7942_0080at 77.931 kb on - strand, within Synpcc7942_0080at 77.931 kb on - strand, within Synpcc7942_0080at 77.949 kb on + strand, within Synpcc7942_0080at 77.966 kb on - strand, within Synpcc7942_0080at 78.019 kb on + strand, within Synpcc7942_0080at 78.019 kb on + strand, within Synpcc7942_0080at 78.019 kb on + strand, within Synpcc7942_0080at 78.027 kb on - strand, within Synpcc7942_0080at 78.027 kb on - strand, within Synpcc7942_0080at 78.033 kb on - strand, within Synpcc7942_0080at 78.039 kb on - strand, within Synpcc7942_0080at 78.047 kb on + strand, within Synpcc7942_0080at 78.047 kb on + strand, within Synpcc7942_0080at 78.075 kb on + strand, within Synpcc7942_0080at 78.151 kb on + strandat 78.151 kb on + strand, within Synpcc7942_0080at 78.159 kb on - strand, within Synpcc7942_0080at 78.159 kb on - strand, within Synpcc7942_0080at 78.184 kb on + strand, within Synpcc7942_0080at 78.192 kb on - strand, within Synpcc7942_0080at 78.194 kb on + strand, within Synpcc7942_0080at 78.194 kb on + strandat 78.204 kb on - strand, within Synpcc7942_0080at 78.204 kb on - strand, within Synpcc7942_0080at 78.210 kb on + strand, within Synpcc7942_0080at 78.211 kb on - strand, within Synpcc7942_0080at 78.245 kb on + strand, within Synpcc7942_0080at 78.253 kb on - strand, within Synpcc7942_0080at 78.255 kb on + strand, within Synpcc7942_0080at 78.260 kb on - strand, within Synpcc7942_0080at 78.301 kb on - strand, within Synpcc7942_0080at 78.312 kb on - strand, within Synpcc7942_0080at 78.318 kb on - strand, within Synpcc7942_0080at 78.333 kb on + strand, within Synpcc7942_0080at 78.398 kb on + strand, within Synpcc7942_0080at 78.398 kb on + strand, within Synpcc7942_0080at 78.463 kb on + strand, within Synpcc7942_0080at 78.471 kb on - strand, within Synpcc7942_0080at 78.471 kb on - strand, within Synpcc7942_0080at 78.471 kb on - strand, within Synpcc7942_0080at 78.496 kb on - strand, within Synpcc7942_0080at 78.506 kb on + strand, within Synpcc7942_0080at 78.506 kb on + strand, within Synpcc7942_0080at 78.516 kb on - strand, within Synpcc7942_0080at 78.536 kb on - strand, within Synpcc7942_0080at 78.552 kb on + strand, within Synpcc7942_0080at 78.567 kb on - strand, within Synpcc7942_0080at 78.582 kb on + strand, within Synpcc7942_0080at 78.658 kb on + strand, within Synpcc7942_0080at 78.664 kb on + strand, within Synpcc7942_0080at 78.694 kb on + strand, within Synpcc7942_0080at 78.712 kb on + strand, within Synpcc7942_0080at 78.727 kb on + strand, within Synpcc7942_0080at 78.739 kb on + strand, within Synpcc7942_0080at 78.739 kb on + strand, within Synpcc7942_0080at 78.739 kb on + strand, within Synpcc7942_0080at 78.747 kb on - strand, within Synpcc7942_0080at 78.747 kb on - strand, within Synpcc7942_0080at 78.759 kb on - strandat 78.760 kb on + strandat 78.768 kb on - strandat 78.773 kb on + strandat 78.802 kb on - strandat 78.802 kb on - strandat 78.819 kb on - strandat 78.847 kb on + strandat 78.867 kb on - strandat 78.877 kb on - strandat 78.881 kb on - strandat 78.912 kb on + strandat 78.931 kb on + strandat 78.936 kb on + strandat 78.939 kb on - strandat 78.939 kb on - strandat 78.944 kb on - strandat 78.947 kb on + strandat 78.953 kb on + strandat 78.956 kb on - strandat 78.961 kb on - strandat 78.961 kb on - strandat 78.961 kb on - strandat 78.961 kb on - strandat 78.992 kb on - strandat 78.993 kb on - strandat 78.998 kb on - strandat 79.009 kb on + strand, within Synpcc7942_0081at 79.009 kb on + strand, within Synpcc7942_0081at 79.042 kb on + strand, within Synpcc7942_0081at 79.069 kb on + strand, within Synpcc7942_0081at 79.080 kb on + strand, within Synpcc7942_0081at 79.114 kb on + strand, within Synpcc7942_0081at 79.198 kb on + strandat 79.198 kb on + strandat 79.200 kb on - strandat 79.224 kb on + strandat 79.224 kb on + strandat 79.239 kb on + strandat 79.242 kb on - strandat 79.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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76,674 + Synpcc7942_0078 0.13 -1.7
76,677 + Synpcc7942_0078 0.14 -0.0
76,743 + Synpcc7942_0078 0.29 +0.5
76,743 + Synpcc7942_0078 0.29 +2.8
76,743 + Synpcc7942_0078 0.29 -0.5
76,743 + Synpcc7942_0078 0.29 -2.2
76,743 + Synpcc7942_0078 0.29 +1.0
76,743 + Synpcc7942_0078 0.29 -0.2
76,743 + +4.0
76,743 + Synpcc7942_0078 0.29 +0.9
76,743 + Synpcc7942_0078 0.29 -0.6
76,751 - Synpcc7942_0078 0.30 +0.3
76,751 - Synpcc7942_0078 0.30 -0.2
76,751 - Synpcc7942_0078 0.30 +0.5
76,751 - Synpcc7942_0078 0.30 -0.7
76,751 - Synpcc7942_0078 0.30 -2.0
76,751 - Synpcc7942_0078 0.30 +2.0
76,751 - Synpcc7942_0078 0.30 -1.2
76,751 - Synpcc7942_0078 0.30 +0.2
76,756 - Synpcc7942_0078 0.32 -1.2
76,770 + Synpcc7942_0078 0.35 -3.1
76,775 + Synpcc7942_0078 0.36 -2.4
76,775 + Synpcc7942_0078 0.36 +1.7
76,775 + Synpcc7942_0078 0.36 +3.1
76,783 - Synpcc7942_0078 0.38 +2.0
76,796 + Synpcc7942_0078 0.40 +0.6
76,796 + Synpcc7942_0078 0.40 -1.0
76,797 + Synpcc7942_0078 0.41 +0.0
76,886 + -0.0
76,889 - Synpcc7942_0078 0.61 -3.7
76,932 - Synpcc7942_0078 0.71 +1.6
76,956 - Synpcc7942_0078 0.76 -1.9
76,958 - Synpcc7942_0078 0.76 -0.1
77,016 + Synpcc7942_0078 0.89 +0.6
77,024 - +0.0
77,028 + -2.6
77,047 + -1.1
77,121 + -0.9
77,128 - -1.6
77,128 - +1.3
77,134 - +2.9
77,166 - -0.6
77,627 + -2.4
77,674 + -1.7
77,696 + -2.0
77,717 - -2.3
77,717 - -2.7
77,719 + -3.4
77,809 + Synpcc7942_0080 0.13 -1.0
77,811 - Synpcc7942_0080 0.13 -2.8
77,824 + Synpcc7942_0080 0.14 -1.8
77,827 - Synpcc7942_0080 0.15 -3.2
77,832 - Synpcc7942_0080 0.15 -0.0
77,832 - Synpcc7942_0080 0.15 -1.6
77,841 + Synpcc7942_0080 0.16 -4.2
77,843 + Synpcc7942_0080 0.16 -1.8
77,860 - Synpcc7942_0080 0.17 -0.1
77,871 + Synpcc7942_0080 0.18 -2.2
77,879 - Synpcc7942_0080 0.19 +1.0
77,879 - Synpcc7942_0080 0.19 -4.3
77,879 - Synpcc7942_0080 0.19 -1.9
77,881 + Synpcc7942_0080 0.19 -2.0
77,913 + Synpcc7942_0080 0.22 -2.1
77,923 + Synpcc7942_0080 0.22 -3.7
77,923 + Synpcc7942_0080 0.22 -0.5
77,931 - Synpcc7942_0080 0.23 -2.9
77,931 - Synpcc7942_0080 0.23 -0.0
77,949 + Synpcc7942_0080 0.25 -0.8
77,966 - Synpcc7942_0080 0.26 -0.6
78,019 + Synpcc7942_0080 0.30 -1.6
78,019 + Synpcc7942_0080 0.30 -1.8
78,019 + Synpcc7942_0080 0.30 -1.7
78,027 - Synpcc7942_0080 0.31 -1.5
78,027 - Synpcc7942_0080 0.31 -0.0
78,033 - Synpcc7942_0080 0.31 -0.9
78,039 - Synpcc7942_0080 0.32 -1.3
78,047 + Synpcc7942_0080 0.33 -0.8
78,047 + Synpcc7942_0080 0.33 -2.8
78,075 + Synpcc7942_0080 0.35 -0.4
78,151 + -0.9
78,151 + Synpcc7942_0080 0.41 +1.0
78,159 - Synpcc7942_0080 0.42 +0.8
78,159 - Synpcc7942_0080 0.42 -3.1
78,184 + Synpcc7942_0080 0.44 -2.5
78,192 - Synpcc7942_0080 0.44 -1.4
78,194 + Synpcc7942_0080 0.45 -0.4
78,194 + +0.2
78,204 - Synpcc7942_0080 0.45 -2.7
78,204 - Synpcc7942_0080 0.45 +1.2
78,210 + Synpcc7942_0080 0.46 -0.6
78,211 - Synpcc7942_0080 0.46 -0.1
78,245 + Synpcc7942_0080 0.49 -0.9
78,253 - Synpcc7942_0080 0.49 -2.3
78,255 + Synpcc7942_0080 0.50 -3.0
78,260 - Synpcc7942_0080 0.50 +1.3
78,301 - Synpcc7942_0080 0.53 +0.2
78,312 - Synpcc7942_0080 0.54 -3.3
78,318 - Synpcc7942_0080 0.55 -2.2
78,333 + Synpcc7942_0080 0.56 -1.0
78,398 + Synpcc7942_0080 0.61 -1.9
78,398 + Synpcc7942_0080 0.61 -2.1
78,463 + Synpcc7942_0080 0.67 -0.0
78,471 - Synpcc7942_0080 0.67 -1.3
78,471 - Synpcc7942_0080 0.67 -0.6
78,471 - Synpcc7942_0080 0.67 +0.2
78,496 - Synpcc7942_0080 0.69 -2.7
78,506 + Synpcc7942_0080 0.70 +0.6
78,506 + Synpcc7942_0080 0.70 -2.4
78,516 - Synpcc7942_0080 0.71 +0.6
78,536 - Synpcc7942_0080 0.73 -3.6
78,552 + Synpcc7942_0080 0.74 -2.1
78,567 - Synpcc7942_0080 0.75 -4.1
78,582 + Synpcc7942_0080 0.76 +1.2
78,658 + Synpcc7942_0080 0.83 -1.9
78,664 + Synpcc7942_0080 0.83 -1.1
78,694 + Synpcc7942_0080 0.85 +1.0
78,712 + Synpcc7942_0080 0.87 -0.2
78,727 + Synpcc7942_0080 0.88 -1.2
78,739 + Synpcc7942_0080 0.89 -1.3
78,739 + Synpcc7942_0080 0.89 -2.2
78,739 + Synpcc7942_0080 0.89 -4.1
78,747 - Synpcc7942_0080 0.90 +1.2
78,747 - Synpcc7942_0080 0.90 -1.2
78,759 - +0.2
78,760 + -2.0
78,768 - +2.2
78,773 + -0.8
78,802 - +1.7
78,802 - -0.4
78,819 - -0.3
78,847 + -1.1
78,867 - +1.2
78,877 - -1.1
78,881 - +4.4
78,912 + -0.4
78,931 + +1.1
78,936 + +1.4
78,939 - +3.4
78,939 - +3.8
78,944 - +2.4
78,947 + +2.7
78,953 + -1.0
78,956 - -1.0
78,961 - +3.7
78,961 - +0.9
78,961 - -2.1
78,961 - +0.4
78,992 - +2.6
78,993 - -0.0
78,998 - +1.0
79,009 + Synpcc7942_0081 0.10 +1.6
79,009 + Synpcc7942_0081 0.10 +3.8
79,042 + Synpcc7942_0081 0.26 +1.3
79,069 + Synpcc7942_0081 0.39 +2.6
79,080 + Synpcc7942_0081 0.44 -0.3
79,114 + Synpcc7942_0081 0.60 -0.1
79,198 + -0.9
79,198 + -1.1
79,200 - +0.2
79,224 + -0.0
79,224 + -1.6
79,239 + +4.2
79,242 - -0.4
79,270 - -5.1

Or see this region's nucleotide sequence