Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0002

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaN and Synpcc7942_0002 are separated by 24 nucleotidesSynpcc7942_0002 and purL are separated by 43 nucleotides Synpcc7942_0001: dnaN - DNA polymerase III subunit beta, at 65 to 1,237 dnaN Synpcc7942_0002: Synpcc7942_0002 - hypothetical protein, at 1,262 to 2,134 _0002 Synpcc7942_0003: purL - phosphoribosylformylglycinamidine synthase II, at 2,178 to 4,511 purL Position (kb) 1 2 3Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 0.339 kb on + strand, within dnaNat 0.342 kb on - strand, within dnaNat 0.362 kb on + strand, within dnaNat 0.380 kb on - strand, within dnaNat 0.405 kb on + strandat 0.417 kb on + strand, within dnaNat 0.425 kb on - strand, within dnaNat 0.427 kb on + strand, within dnaNat 0.430 kb on - strand, within dnaNat 0.430 kb on - strand, within dnaNat 0.481 kb on + strand, within dnaNat 0.492 kb on + strand, within dnaNat 0.499 kb on - strand, within dnaNat 0.502 kb on - strand, within dnaNat 0.525 kb on - strand, within dnaNat 0.579 kb on - strand, within dnaNat 0.589 kb on + strand, within dnaNat 0.596 kb on - strand, within dnaNat 0.597 kb on - strand, within dnaNat 0.604 kb on - strand, within dnaNat 0.608 kb on + strand, within dnaNat 0.608 kb on + strand, within dnaNat 0.609 kb on + strandat 0.615 kb on + strand, within dnaNat 0.644 kb on + strand, within dnaNat 0.649 kb on + strand, within dnaNat 0.721 kb on + strand, within dnaNat 0.768 kb on + strand, within dnaNat 1.000 kb on + strand, within dnaNat 1.008 kb on - strand, within dnaNat 1.126 kb on - strandat 1.169 kb on + strandat 1.200 kb on - strandat 1.231 kb on + strandat 1.287 kb on - strandat 1.294 kb on + strandat 1.294 kb on - strandat 1.348 kb on - strandat 1.363 kb on + strand, within Synpcc7942_0002at 1.363 kb on + strand, within Synpcc7942_0002at 1.371 kb on - strand, within Synpcc7942_0002at 1.399 kb on - strand, within Synpcc7942_0002at 1.418 kb on - strand, within Synpcc7942_0002at 1.430 kb on - strand, within Synpcc7942_0002at 1.451 kb on + strand, within Synpcc7942_0002at 1.459 kb on - strand, within Synpcc7942_0002at 1.464 kb on - strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.488 kb on + strand, within Synpcc7942_0002at 1.492 kb on - strand, within Synpcc7942_0002at 1.494 kb on - strand, within Synpcc7942_0002at 1.531 kb on + strand, within Synpcc7942_0002at 1.536 kb on + strand, within Synpcc7942_0002at 1.564 kb on - strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.624 kb on + strand, within Synpcc7942_0002at 1.624 kb on + strand, within Synpcc7942_0002at 1.627 kb on - strand, within Synpcc7942_0002at 1.627 kb on - strand, within Synpcc7942_0002at 1.629 kb on + strand, within Synpcc7942_0002at 1.629 kb on + strand, within Synpcc7942_0002at 1.632 kb on + strand, within Synpcc7942_0002at 1.632 kb on - strand, within Synpcc7942_0002at 1.632 kb on - strand, within Synpcc7942_0002at 1.672 kb on - strand, within Synpcc7942_0002at 1.683 kb on - strand, within Synpcc7942_0002at 1.689 kb on + strand, within Synpcc7942_0002at 1.700 kb on + strand, within Synpcc7942_0002at 1.700 kb on + strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.731 kb on - strand, within Synpcc7942_0002at 1.780 kb on - strand, within Synpcc7942_0002at 1.802 kb on - strand, within Synpcc7942_0002at 1.825 kb on - strand, within Synpcc7942_0002at 1.827 kb on + strand, within Synpcc7942_0002at 1.827 kb on + strand, within Synpcc7942_0002at 1.827 kb on + strandat 1.835 kb on - strand, within Synpcc7942_0002at 1.856 kb on - strand, within Synpcc7942_0002at 1.862 kb on - strand, within Synpcc7942_0002at 1.868 kb on + strand, within Synpcc7942_0002at 1.882 kb on + strand, within Synpcc7942_0002at 1.882 kb on + strand, within Synpcc7942_0002at 1.890 kb on - strand, within Synpcc7942_0002at 1.904 kb on + strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.913 kb on - strand, within Synpcc7942_0002at 1.915 kb on + strand, within Synpcc7942_0002at 1.915 kb on + strand, within Synpcc7942_0002at 1.925 kb on + strand, within Synpcc7942_0002at 1.937 kb on + strand, within Synpcc7942_0002at 1.937 kb on + strandat 1.945 kb on - strand, within Synpcc7942_0002at 1.960 kb on - strand, within Synpcc7942_0002at 1.973 kb on - strand, within Synpcc7942_0002at 1.983 kb on - strand, within Synpcc7942_0002at 1.983 kb on - strand, within Synpcc7942_0002at 1.996 kb on + strand, within Synpcc7942_0002at 1.996 kb on + strand, within Synpcc7942_0002at 1.996 kb on + strand, within Synpcc7942_0002at 2.003 kb on - strand, within Synpcc7942_0002at 2.004 kb on - strand, within Synpcc7942_0002at 2.004 kb on - strand, within Synpcc7942_0002at 2.053 kb on + strandat 2.129 kb on + strandat 2.129 kb on + strandat 2.129 kb on + strandat 2.129 kb on + strandat 2.728 kb on - strand, within purLat 2.859 kb on + strand, within purLat 2.941 kb on + strand, within purL

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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339 + dnaN Synpcc7942_0001 0.23 +1.8
342 - dnaN Synpcc7942_0001 0.24 +2.2
362 + dnaN Synpcc7942_0001 0.25 -1.4
380 - dnaN Synpcc7942_0001 0.27 -1.3
405 + -0.1
417 + dnaN Synpcc7942_0001 0.30 -3.2
425 - dnaN Synpcc7942_0001 0.31 +1.7
427 + dnaN Synpcc7942_0001 0.31 -0.0
430 - dnaN Synpcc7942_0001 0.31 +1.7
430 - dnaN Synpcc7942_0001 0.31 -0.9
481 + dnaN Synpcc7942_0001 0.35 +1.0
492 + dnaN Synpcc7942_0001 0.36 +1.2
499 - dnaN Synpcc7942_0001 0.37 +1.5
502 - dnaN Synpcc7942_0001 0.37 -1.2
525 - dnaN Synpcc7942_0001 0.39 -0.7
579 - dnaN Synpcc7942_0001 0.44 -0.6
589 + dnaN Synpcc7942_0001 0.45 -3.2
596 - dnaN Synpcc7942_0001 0.45 +3.7
597 - dnaN Synpcc7942_0001 0.45 +1.4
604 - dnaN Synpcc7942_0001 0.46 -0.9
608 + dnaN Synpcc7942_0001 0.46 +0.0
608 + dnaN Synpcc7942_0001 0.46 -2.2
609 + +0.8
615 + dnaN Synpcc7942_0001 0.47 -2.2
644 + dnaN Synpcc7942_0001 0.49 -0.6
649 + dnaN Synpcc7942_0001 0.50 +1.3
721 + dnaN Synpcc7942_0001 0.56 +0.3
768 + dnaN Synpcc7942_0001 0.60 +0.2
1,000 + dnaN Synpcc7942_0001 0.80 -0.8
1,008 - dnaN Synpcc7942_0001 0.80 -1.4
1,126 - -2.2
1,169 + -2.2
1,200 - -2.8
1,231 + +0.2
1,287 - +2.1
1,294 + -1.5
1,294 - +2.3
1,348 - -3.0
1,363 + Synpcc7942_0002 0.12 -0.6
1,363 + Synpcc7942_0002 0.12 -1.8
1,371 - Synpcc7942_0002 0.12 +1.2
1,399 - Synpcc7942_0002 0.16 -1.2
1,418 - Synpcc7942_0002 0.18 -1.5
1,430 - Synpcc7942_0002 0.19 -1.9
1,451 + Synpcc7942_0002 0.22 -0.8
1,459 - Synpcc7942_0002 0.23 -1.1
1,464 - Synpcc7942_0002 0.23 -3.4
1,486 + Synpcc7942_0002 0.26 -0.9
1,486 + Synpcc7942_0002 0.26 -2.6
1,486 + Synpcc7942_0002 0.26 -3.0
1,486 + Synpcc7942_0002 0.26 -0.6
1,488 + Synpcc7942_0002 0.26 -0.9
1,492 - Synpcc7942_0002 0.26 -2.2
1,494 - Synpcc7942_0002 0.27 -0.8
1,531 + Synpcc7942_0002 0.31 -4.9
1,536 + Synpcc7942_0002 0.31 -0.4
1,564 - Synpcc7942_0002 0.35 -1.8
1,619 + Synpcc7942_0002 0.41 -3.6
1,619 + Synpcc7942_0002 0.41 -2.5
1,619 + Synpcc7942_0002 0.41 -2.1
1,619 + Synpcc7942_0002 0.41 -1.0
1,624 + Synpcc7942_0002 0.41 +0.2
1,624 + Synpcc7942_0002 0.41 -2.5
1,627 - Synpcc7942_0002 0.42 -3.3
1,627 - Synpcc7942_0002 0.42 -1.0
1,629 + Synpcc7942_0002 0.42 -2.0
1,629 + Synpcc7942_0002 0.42 -1.3
1,632 + Synpcc7942_0002 0.42 -3.7
1,632 - Synpcc7942_0002 0.42 -1.6
1,632 - Synpcc7942_0002 0.42 -1.8
1,672 - Synpcc7942_0002 0.47 -2.2
1,683 - Synpcc7942_0002 0.48 -1.8
1,689 + Synpcc7942_0002 0.49 -0.2
1,700 + Synpcc7942_0002 0.50 +0.6
1,700 + Synpcc7942_0002 0.50 -3.5
1,708 - Synpcc7942_0002 0.51 -3.6
1,708 - Synpcc7942_0002 0.51 -1.1
1,708 - Synpcc7942_0002 0.51 -4.4
1,708 - Synpcc7942_0002 0.51 -2.7
1,731 - Synpcc7942_0002 0.54 -2.7
1,780 - Synpcc7942_0002 0.59 -0.2
1,802 - Synpcc7942_0002 0.62 -0.4
1,825 - Synpcc7942_0002 0.64 -0.8
1,827 + Synpcc7942_0002 0.65 -2.4
1,827 + Synpcc7942_0002 0.65 -2.1
1,827 + -0.6
1,835 - Synpcc7942_0002 0.66 -0.5
1,856 - Synpcc7942_0002 0.68 -0.6
1,862 - Synpcc7942_0002 0.69 -0.0
1,868 + Synpcc7942_0002 0.69 -2.8
1,882 + Synpcc7942_0002 0.71 -1.7
1,882 + Synpcc7942_0002 0.71 -2.4
1,890 - Synpcc7942_0002 0.72 -1.8
1,904 + Synpcc7942_0002 0.74 -0.5
1,912 - Synpcc7942_0002 0.74 -1.8
1,912 - Synpcc7942_0002 0.74 -2.2
1,912 - Synpcc7942_0002 0.74 +0.6
1,912 - Synpcc7942_0002 0.74 -2.3
1,912 - Synpcc7942_0002 0.74 -1.1
1,913 - Synpcc7942_0002 0.75 -2.2
1,915 + Synpcc7942_0002 0.75 -3.3
1,915 + Synpcc7942_0002 0.75 -2.3
1,925 + Synpcc7942_0002 0.76 +1.7
1,937 + Synpcc7942_0002 0.77 -0.9
1,937 + +1.0
1,945 - Synpcc7942_0002 0.78 -1.1
1,960 - Synpcc7942_0002 0.80 -0.2
1,973 - Synpcc7942_0002 0.81 -2.4
1,983 - Synpcc7942_0002 0.83 -4.4
1,983 - Synpcc7942_0002 0.83 -0.0
1,996 + Synpcc7942_0002 0.84 -2.2
1,996 + Synpcc7942_0002 0.84 -1.8
1,996 + Synpcc7942_0002 0.84 -1.1
2,003 - Synpcc7942_0002 0.85 -0.4
2,004 - Synpcc7942_0002 0.85 -3.4
2,004 - Synpcc7942_0002 0.85 -2.8
2,053 + -0.6
2,129 + +1.1
2,129 + +2.6
2,129 + -1.9
2,129 + +2.7
2,728 - purL Synpcc7942_0003 0.24 -0.4
2,859 + purL Synpcc7942_0003 0.29 +1.1
2,941 + purL Synpcc7942_0003 0.33 -1.2

Or see this region's nucleotide sequence