Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1583 and Pf6N2E2_1584 are separated by 117 nucleotides Pf6N2E2_1584 and Pf6N2E2_1585 are separated by 83 nucleotides Pf6N2E2_1585 and Pf6N2E2_1586 overlap by 6 nucleotides
Pf6N2E2_1583 - ABC-type protease/lipase transport system, ATPase and permease components, at 1,852,673 to 1,854,457
_1583
Pf6N2E2_1584 - Transcriptional regulator, MarR family / Acetyltransferase (GNAT), at 1,854,575 to 1,855,486
_1584
Pf6N2E2_1585 - hypothetical protein, at 1,855,570 to 1,855,704
_1585
Pf6N2E2_1586 - Transcriptional regulator, TetR family, at 1,855,699 to 1,856,241
_1586
Position (kb)
1854
1855
1856 Strain fitness (log2 ratio)
-1
0
1
2 at 1853.676 kb on + strand, within Pf6N2E2_1583 at 1853.723 kb on - strand, within Pf6N2E2_1583 at 1853.875 kb on - strand, within Pf6N2E2_1583 at 1854.024 kb on + strand, within Pf6N2E2_1583 at 1854.024 kb on + strand, within Pf6N2E2_1583 at 1854.025 kb on - strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.165 kb on + strand, within Pf6N2E2_1583 at 1854.166 kb on - strand, within Pf6N2E2_1583 at 1854.245 kb on + strand, within Pf6N2E2_1583 at 1854.295 kb on + strand at 1854.339 kb on + strand at 1854.340 kb on - strand at 1854.351 kb on - strand at 1854.495 kb on - strand at 1854.519 kb on - strand at 1854.776 kb on + strand, within Pf6N2E2_1584 at 1854.882 kb on - strand, within Pf6N2E2_1584 at 1855.006 kb on - strand, within Pf6N2E2_1584 at 1855.129 kb on - strand, within Pf6N2E2_1584 at 1855.172 kb on + strand, within Pf6N2E2_1584 at 1855.173 kb on - strand, within Pf6N2E2_1584 at 1855.412 kb on + strand at 1855.413 kb on - strand at 1855.567 kb on + strand at 1855.568 kb on - strand at 1855.680 kb on + strand, within Pf6N2E2_1585 at 1855.701 kb on - strand at 1855.701 kb on - strand at 1855.701 kb on - strand at 1855.701 kb on - strand at 1855.701 kb on - strand at 1855.778 kb on - strand, within Pf6N2E2_1586 at 1856.324 kb on - strand at 1856.324 kb on - strand at 1856.324 kb on - strand at 1856.327 kb on + strand at 1856.328 kb on - strand at 1856.328 kb on - strand at 1856.387 kb on + strand at 1856.387 kb on + strand at 1856.388 kb on - strand at 1856.388 kb on - strand at 1856.393 kb on - strand at 1856.416 kb on - strand at 1856.416 kb on - strand at 1856.443 kb on + strand at 1856.444 kb on - strand at 1856.444 kb on - strand at 1856.444 kb on - strand at 1856.454 kb on + strand at 1856.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,853,676 + Pf6N2E2_1583 0.56 +0.5 1,853,723 - Pf6N2E2_1583 0.59 -0.8 1,853,875 - Pf6N2E2_1583 0.67 +1.8 1,854,024 + Pf6N2E2_1583 0.76 +0.3 1,854,024 + Pf6N2E2_1583 0.76 -1.4 1,854,025 - Pf6N2E2_1583 0.76 -0.7 1,854,163 + Pf6N2E2_1583 0.83 -0.2 1,854,163 + Pf6N2E2_1583 0.83 +1.0 1,854,163 + Pf6N2E2_1583 0.83 -1.1 1,854,165 + Pf6N2E2_1583 0.84 +0.6 1,854,166 - Pf6N2E2_1583 0.84 +0.5 1,854,245 + Pf6N2E2_1583 0.88 +0.2 1,854,295 + -1.3 1,854,339 + +0.9 1,854,340 - -0.3 1,854,351 - -0.1 1,854,495 - +1.1 1,854,519 - -0.5 1,854,776 + Pf6N2E2_1584 0.22 -1.3 1,854,882 - Pf6N2E2_1584 0.34 +0.8 1,855,006 - Pf6N2E2_1584 0.47 +0.1 1,855,129 - Pf6N2E2_1584 0.61 -0.3 1,855,172 + Pf6N2E2_1584 0.65 -0.5 1,855,173 - Pf6N2E2_1584 0.66 -1.4 1,855,412 + -0.8 1,855,413 - -0.4 1,855,567 + -1.2 1,855,568 - +1.3 1,855,680 + Pf6N2E2_1585 0.81 +0.5 1,855,701 - -0.4 1,855,701 - +0.1 1,855,701 - +1.0 1,855,701 - +0.6 1,855,701 - +0.2 1,855,778 - Pf6N2E2_1586 0.15 -0.2 1,856,324 - -1.0 1,856,324 - +2.1 1,856,324 - -0.6 1,856,327 + +1.2 1,856,328 - -0.8 1,856,328 - +0.5 1,856,387 + +0.1 1,856,387 + -0.1 1,856,388 - +0.0 1,856,388 - +0.8 1,856,393 - +1.2 1,856,416 - +0.5 1,856,416 - +0.9 1,856,443 + -0.7 1,856,444 - +0.9 1,856,444 - +1.0 1,856,444 - +0.0 1,856,454 + -0.2 1,856,455 - +0.0
Or see this region's nucleotide sequence