Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03310

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03305 and MMJJ_RS03310 are separated by 14 nucleotidesMMJJ_RS03310 and MMJJ_RS03315 are separated by 211 nucleotides MMJJ_RS03305: MMJJ_RS03305 - zincin-like metallopeptidase domain-containing protein, at 627,263 to 629,320 _RS03305 MMJJ_RS03310: MMJJ_RS03310 - hypothetical protein, at 629,335 to 629,553 _RS03310 MMJJ_RS03315: MMJJ_RS03315 - hypothetical protein, at 629,765 to 631,825 _RS03315 Position (kb) 629 630Strain fitness (log2 ratio) -2 -1 0 1 2at 628.373 kb on + strand, within MMJJ_RS03305at 628.426 kb on + strand, within MMJJ_RS03305at 628.430 kb on + strand, within MMJJ_RS03305at 628.482 kb on - strand, within MMJJ_RS03305at 628.483 kb on + strand, within MMJJ_RS03305at 628.506 kb on - strand, within MMJJ_RS03305at 628.506 kb on - strand, within MMJJ_RS03305at 628.506 kb on - strand, within MMJJ_RS03305at 628.507 kb on + strand, within MMJJ_RS03305at 628.509 kb on - strand, within MMJJ_RS03305at 628.607 kb on + strand, within MMJJ_RS03305at 628.614 kb on - strand, within MMJJ_RS03305at 628.929 kb on - strand, within MMJJ_RS03305at 628.985 kb on - strand, within MMJJ_RS03305at 628.986 kb on + strand, within MMJJ_RS03305at 629.031 kb on - strand, within MMJJ_RS03305at 629.031 kb on - strand, within MMJJ_RS03305at 629.031 kb on - strand, within MMJJ_RS03305at 629.031 kb on - strand, within MMJJ_RS03305at 629.032 kb on + strand, within MMJJ_RS03305at 629.041 kb on + strand, within MMJJ_RS03305at 629.051 kb on - strand, within MMJJ_RS03305at 629.052 kb on + strand, within MMJJ_RS03305at 629.058 kb on - strand, within MMJJ_RS03305at 629.058 kb on - strand, within MMJJ_RS03305at 629.089 kb on - strand, within MMJJ_RS03305at 629.111 kb on + strand, within MMJJ_RS03305at 629.126 kb on - strandat 629.165 kb on - strandat 629.167 kb on - strandat 629.167 kb on - strandat 629.168 kb on + strandat 629.168 kb on + strandat 629.168 kb on + strandat 629.168 kb on + strandat 629.222 kb on + strandat 629.227 kb on - strandat 629.227 kb on - strandat 629.227 kb on - strandat 629.227 kb on - strandat 629.227 kb on - strandat 629.227 kb on - strandat 629.228 kb on + strandat 629.228 kb on + strandat 629.228 kb on + strandat 629.230 kb on + strandat 629.235 kb on - strandat 629.252 kb on - strandat 629.312 kb on - strandat 629.313 kb on + strandat 629.318 kb on - strandat 629.324 kb on + strandat 629.331 kb on - strandat 629.367 kb on + strand, within MMJJ_RS03310at 629.384 kb on - strand, within MMJJ_RS03310at 629.385 kb on + strand, within MMJJ_RS03310at 629.427 kb on - strand, within MMJJ_RS03310at 629.436 kb on - strand, within MMJJ_RS03310at 629.436 kb on - strand, within MMJJ_RS03310at 629.448 kb on + strand, within MMJJ_RS03310at 629.503 kb on - strand, within MMJJ_RS03310at 629.503 kb on - strand, within MMJJ_RS03310at 629.504 kb on + strand, within MMJJ_RS03310at 629.505 kb on - strandat 629.550 kb on + strandat 629.551 kb on - strandat 629.552 kb on + strandat 629.590 kb on + strandat 629.590 kb on + strandat 629.630 kb on - strandat 629.633 kb on + strandat 629.644 kb on + strandat 629.804 kb on - strandat 629.813 kb on + strandat 629.861 kb on - strandat 629.861 kb on - strandat 629.861 kb on - strandat 629.861 kb on - strandat 629.862 kb on + strandat 629.862 kb on + strandat 629.864 kb on - strandat 629.864 kb on - strandat 629.873 kb on - strandat 629.873 kb on - strandat 629.899 kb on - strandat 629.907 kb on + strandat 629.910 kb on + strandat 629.968 kb on - strandat 629.997 kb on + strand, within MMJJ_RS03315at 630.021 kb on - strand, within MMJJ_RS03315at 630.021 kb on - strand, within MMJJ_RS03315at 630.021 kb on - strand, within MMJJ_RS03315at 630.025 kb on + strand, within MMJJ_RS03315at 630.067 kb on + strand, within MMJJ_RS03315at 630.067 kb on + strand, within MMJJ_RS03315at 630.067 kb on + strand, within MMJJ_RS03315at 630.069 kb on - strand, within MMJJ_RS03315at 630.070 kb on + strand, within MMJJ_RS03315at 630.094 kb on - strand, within MMJJ_RS03315at 630.095 kb on + strand, within MMJJ_RS03315at 630.110 kb on + strand, within MMJJ_RS03315at 630.319 kb on - strand, within MMJJ_RS03315at 630.320 kb on + strand, within MMJJ_RS03315at 630.320 kb on + strandat 630.324 kb on + strand, within MMJJ_RS03315at 630.392 kb on + strand, within MMJJ_RS03315at 630.412 kb on - strand, within MMJJ_RS03315at 630.422 kb on + strand, within MMJJ_RS03315at 630.437 kb on - strand, within MMJJ_RS03315at 630.438 kb on + strand, within MMJJ_RS03315at 630.438 kb on + strand, within MMJJ_RS03315at 630.465 kb on - strand, within MMJJ_RS03315at 630.466 kb on + strand, within MMJJ_RS03315at 630.467 kb on - strand, within MMJJ_RS03315at 630.467 kb on - strand, within MMJJ_RS03315at 630.467 kb on - strand, within MMJJ_RS03315at 630.467 kb on - strand, within MMJJ_RS03315at 630.467 kb on - strand, within MMJJ_RS03315at 630.468 kb on + strand, within MMJJ_RS03315at 630.468 kb on + strand, within MMJJ_RS03315at 630.468 kb on + strand, within MMJJ_RS03315at 630.468 kb on + strand, within MMJJ_RS03315at 630.468 kb on + strand, within MMJJ_RS03315at 630.468 kb on + strand, within MMJJ_RS03315at 630.469 kb on - strand, within MMJJ_RS03315at 630.470 kb on + strand, within MMJJ_RS03315at 630.493 kb on - strand, within MMJJ_RS03315at 630.494 kb on + strand, within MMJJ_RS03315at 630.494 kb on + strand, within MMJJ_RS03315at 630.496 kb on + strand, within MMJJ_RS03315at 630.530 kb on + strand, within MMJJ_RS03315

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
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628,373 + MMJJ_RS03305 0.54 -0.7
628,426 + MMJJ_RS03305 0.57 -0.0
628,430 + MMJJ_RS03305 0.57 +0.1
628,482 - MMJJ_RS03305 0.59 -0.4
628,483 + MMJJ_RS03305 0.59 +0.2
628,506 - MMJJ_RS03305 0.60 +0.3
628,506 - MMJJ_RS03305 0.60 -1.0
628,506 - MMJJ_RS03305 0.60 +0.2
628,507 + MMJJ_RS03305 0.60 +0.4
628,509 - MMJJ_RS03305 0.61 +0.3
628,607 + MMJJ_RS03305 0.65 +0.3
628,614 - MMJJ_RS03305 0.66 +0.6
628,929 - MMJJ_RS03305 0.81 -0.5
628,985 - MMJJ_RS03305 0.84 -0.0
628,986 + MMJJ_RS03305 0.84 +0.3
629,031 - MMJJ_RS03305 0.86 -0.3
629,031 - MMJJ_RS03305 0.86 -1.7
629,031 - MMJJ_RS03305 0.86 -0.3
629,031 - MMJJ_RS03305 0.86 +0.6
629,032 + MMJJ_RS03305 0.86 -0.3
629,041 + MMJJ_RS03305 0.86 -0.0
629,051 - MMJJ_RS03305 0.87 -0.1
629,052 + MMJJ_RS03305 0.87 -0.2
629,058 - MMJJ_RS03305 0.87 +0.8
629,058 - MMJJ_RS03305 0.87 +0.3
629,089 - MMJJ_RS03305 0.89 -0.3
629,111 + MMJJ_RS03305 0.90 +0.8
629,126 - -1.0
629,165 - +0.7
629,167 - +0.2
629,167 - -0.4
629,168 + +0.1
629,168 + -0.7
629,168 + +0.4
629,168 + +0.6
629,222 + +0.6
629,227 - -0.2
629,227 - -0.3
629,227 - -0.1
629,227 - -0.0
629,227 - +0.5
629,227 - -0.4
629,228 + +0.3
629,228 + -0.0
629,228 + +0.6
629,230 + -0.4
629,235 - +0.0
629,252 - +0.3
629,312 - -0.0
629,313 + -0.5
629,318 - +0.5
629,324 + -0.5
629,331 - -0.7
629,367 + MMJJ_RS03310 0.15 -1.4
629,384 - MMJJ_RS03310 0.22 -1.4
629,385 + MMJJ_RS03310 0.23 -2.4
629,427 - MMJJ_RS03310 0.42 -0.6
629,436 - MMJJ_RS03310 0.46 -1.5
629,436 - MMJJ_RS03310 0.46 -1.0
629,448 + MMJJ_RS03310 0.52 -0.0
629,503 - MMJJ_RS03310 0.77 -2.5
629,503 - MMJJ_RS03310 0.77 -1.8
629,504 + MMJJ_RS03310 0.77 +0.4
629,505 - -1.4
629,550 + -0.5
629,551 - +0.7
629,552 + -0.2
629,590 + +0.4
629,590 + -0.4
629,630 - +0.2
629,633 + -0.1
629,644 + +0.0
629,804 - -0.5
629,813 + -0.1
629,861 - +0.0
629,861 - -0.2
629,861 - -0.0
629,861 - +0.3
629,862 + +0.0
629,862 + +0.0
629,864 - +0.8
629,864 - -1.0
629,873 - -0.8
629,873 - -0.3
629,899 - -0.2
629,907 + -0.6
629,910 + +0.5
629,968 - -0.4
629,997 + MMJJ_RS03315 0.11 +0.0
630,021 - MMJJ_RS03315 0.12 -0.1
630,021 - MMJJ_RS03315 0.12 +0.1
630,021 - MMJJ_RS03315 0.12 +1.3
630,025 + MMJJ_RS03315 0.13 -0.6
630,067 + MMJJ_RS03315 0.15 -0.1
630,067 + MMJJ_RS03315 0.15 -1.0
630,067 + MMJJ_RS03315 0.15 -0.1
630,069 - MMJJ_RS03315 0.15 +0.1
630,070 + MMJJ_RS03315 0.15 -0.0
630,094 - MMJJ_RS03315 0.16 -0.1
630,095 + MMJJ_RS03315 0.16 +0.0
630,110 + MMJJ_RS03315 0.17 -0.1
630,319 - MMJJ_RS03315 0.27 -0.0
630,320 + MMJJ_RS03315 0.27 +0.1
630,320 + +0.2
630,324 + MMJJ_RS03315 0.27 +0.0
630,392 + MMJJ_RS03315 0.30 +0.0
630,412 - MMJJ_RS03315 0.31 +0.2
630,422 + MMJJ_RS03315 0.32 -0.1
630,437 - MMJJ_RS03315 0.33 -0.1
630,438 + MMJJ_RS03315 0.33 +0.1
630,438 + MMJJ_RS03315 0.33 -0.3
630,465 - MMJJ_RS03315 0.34 -1.3
630,466 + MMJJ_RS03315 0.34 -0.4
630,467 - MMJJ_RS03315 0.34 -0.1
630,467 - MMJJ_RS03315 0.34 +0.2
630,467 - MMJJ_RS03315 0.34 -1.6
630,467 - MMJJ_RS03315 0.34 -0.3
630,467 - MMJJ_RS03315 0.34 -0.1
630,468 + MMJJ_RS03315 0.34 +0.6
630,468 + MMJJ_RS03315 0.34 -0.6
630,468 + MMJJ_RS03315 0.34 -0.6
630,468 + MMJJ_RS03315 0.34 +0.0
630,468 + MMJJ_RS03315 0.34 +0.1
630,468 + MMJJ_RS03315 0.34 -0.4
630,469 - MMJJ_RS03315 0.34 -0.7
630,470 + MMJJ_RS03315 0.34 +0.0
630,493 - MMJJ_RS03315 0.35 +0.3
630,494 + MMJJ_RS03315 0.35 +0.4
630,494 + MMJJ_RS03315 0.35 -0.1
630,496 + MMJJ_RS03315 0.35 +0.4
630,530 + MMJJ_RS03315 0.37 +2.0

Or see this region's nucleotide sequence