Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12500

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
2,787,185	+		LRK54_RS12495	0.28	+0.5
2,787,185	+		LRK54_RS12495	0.28	+0.6
2,787,185	+		LRK54_RS12495	0.28	+1.0
2,787,185	+		LRK54_RS12495	0.28	+0.2
2,787,185	+		LRK54_RS12495	0.28	+1.3
2,787,185	+		LRK54_RS12495	0.28	+1.3
2,787,185	+		LRK54_RS12495	0.28	+1.9
2,787,185	+		LRK54_RS12495	0.28	-0.2
2,787,185	+		LRK54_RS12495	0.28	+1.2
2,787,185	+		LRK54_RS12495	0.28	-0.8
2,787,185	+		LRK54_RS12495	0.28	-0.8
2,787,185	+		LRK54_RS12495	0.28	+0.1
2,787,186	-		LRK54_RS12495	0.28	+0.5
2,787,186	-		LRK54_RS12495	0.28	-0.4
2,787,186	-		LRK54_RS12495	0.28	-1.2
2,787,186	-		LRK54_RS12495	0.28	+1.1
2,787,186	-		LRK54_RS12495	0.28	+0.9
2,787,186	-		LRK54_RS12495	0.28	+0.2
2,787,186	-		LRK54_RS12495	0.28	-0.5
2,787,186	-		LRK54_RS12495	0.28	+0.7
2,787,186	-		LRK54_RS12495	0.28	-0.3
2,787,186	-		LRK54_RS12495	0.28	+1.3
2,787,186	-		LRK54_RS12495	0.28	+0.1
2,787,186	-		LRK54_RS12495	0.28	-0.4
2,787,401	+		LRK54_RS12495	0.50	+0.4
2,787,401	+		LRK54_RS12495	0.50	+0.5
2,787,401	+		LRK54_RS12495	0.50	+0.7
2,787,401	+		LRK54_RS12495	0.50	+0.3
2,787,401	+		LRK54_RS12495	0.50	-1.0
2,787,401	+		LRK54_RS12495	0.50	-1.9
2,787,401	+		LRK54_RS12495	0.50	+1.3
2,787,402	-		LRK54_RS12495	0.50	+0.3
2,787,402	-		LRK54_RS12495	0.50	-0.7
2,787,402	-		LRK54_RS12495	0.50	-0.2
2,787,402	-		LRK54_RS12495	0.50	-1.3
2,787,402	-		LRK54_RS12495	0.50	+0.7
2,787,402	-		LRK54_RS12495	0.50	-0.9
2,787,402	-		LRK54_RS12495	0.50	+1.0
2,787,402	-		LRK54_RS12495	0.50	+0.3
2,787,620	+		LRK54_RS12495	0.72	-1.1
2,787,620	+		LRK54_RS12495	0.72	+0.2
2,787,621	-		LRK54_RS12495	0.72	-0.3
2,787,621	-		LRK54_RS12495	0.72	-0.3
2,787,921	+				-0.9
2,787,921	+				-0.2
2,787,921	+				-0.1
2,787,921	+				-0.1
2,787,922	-				+0.6
2,787,922	-				+0.2
2,787,922	-				+0.4
2,787,922	-				+0.8
2,787,922	-				+0.9
2,788,014	+				+1.5
2,788,390	-		LRK54_RS12500	0.27	-0.2
2,788,390	-		LRK54_RS12500	0.27	+1.3
2,788,390	-		LRK54_RS12500	0.27	+0.3
2,788,390	-		LRK54_RS12500	0.27	-1.1
2,788,513	-		LRK54_RS12500	0.36	+0.3
2,788,513	-		LRK54_RS12500	0.36	+0.6
2,788,636	-		LRK54_RS12500	0.46	+1.8
2,788,804	+		LRK54_RS12500	0.59	+1.4
2,788,804	+		LRK54_RS12500	0.59	-0.2
2,788,804	+		LRK54_RS12500	0.59	+0.3
2,788,804	+		LRK54_RS12500	0.59	-0.9
2,788,804	+		LRK54_RS12500	0.59	+1.1
2,788,804	+		LRK54_RS12500	0.59	+1.4
2,788,804	+		LRK54_RS12500	0.59	+0.8
2,788,804	+		LRK54_RS12500	0.59	+0.4
2,788,804	+		LRK54_RS12500	0.59	+0.4
2,788,804	+		LRK54_RS12500	0.59	+1.5
2,788,804	+		LRK54_RS12500	0.59	+0.0
2,788,804	+		LRK54_RS12500	0.59	+0.1
2,788,804	+		LRK54_RS12500	0.59	+0.3
2,788,804	+		LRK54_RS12500	0.59	+2.2
2,788,804	+		LRK54_RS12500	0.59	+2.1
2,788,804	+		LRK54_RS12500	0.59	-1.8
2,788,804	+		LRK54_RS12500	0.59	+0.6
2,788,805	-		LRK54_RS12500	0.59	-0.0
2,788,805	-		LRK54_RS12500	0.59	-0.5
2,788,805	-		LRK54_RS12500	0.59	+0.6
2,788,805	-		LRK54_RS12500	0.59	+0.6
2,788,805	-		LRK54_RS12500	0.59	-0.8
2,788,805	-		LRK54_RS12500	0.59	-0.4
2,788,805	-		LRK54_RS12500	0.59	-0.2
2,788,805	-		LRK54_RS12500	0.59	+1.5
2,788,805	-		LRK54_RS12500	0.59	+0.1
2,788,805	-		LRK54_RS12500	0.59	+0.2
2,788,805	-		LRK54_RS12500	0.59	+0.4
2,788,947	+		LRK54_RS12500	0.69	+0.5
2,788,980	+		LRK54_RS12500	0.72	+1.2
2,788,980	+		LRK54_RS12500	0.72	+0.3
2,788,980	+		LRK54_RS12500	0.72	+0.9
2,788,980	+		LRK54_RS12500	0.72	-1.5
2,788,981	-		LRK54_RS12500	0.72	+1.8
2,788,981	-		LRK54_RS12500	0.72	-0.5
2,788,981	-		LRK54_RS12500	0.72	-0.4
2,788,981	-		LRK54_RS12500	0.72	+0.9
2,789,211	+		LRK54_RS12500	0.90	+1.3
2,789,211	+		LRK54_RS12500	0.90	-0.8
2,789,211	+		LRK54_RS12500	0.90	+0.5
2,789,211	+		LRK54_RS12500	0.90	-0.1
2,789,211	+		LRK54_RS12500	0.90	+0.7
2,789,211	+		LRK54_RS12500	0.90	+0.4
2,789,211	+		LRK54_RS12500	0.90	-2.1
2,789,212	-		LRK54_RS12500	0.90	+1.8
2,789,212	-		LRK54_RS12500	0.90	+1.0
2,789,212	-		LRK54_RS12500	0.90	-0.1
2,789,212	-		LRK54_RS12500	0.90	+0.4
2,789,212	-		LRK54_RS12500	0.90	-0.2
2,789,212	-		LRK54_RS12500	0.90	+3.0
2,789,212	-		LRK54_RS12500	0.90	-0.6
2,789,212	-		LRK54_RS12500	0.90	-0.3
2,789,212	-		LRK54_RS12500	0.90	-0.1
2,789,212	-		LRK54_RS12500	0.90	-0.3
2,789,212	-		LRK54_RS12500	0.90	-0.1
2,789,314	-				-1.1
2,789,314	-				+0.3
2,789,314	-				+0.9
2,789,343	+				+0.8
2,789,343	+				-0.1
2,789,344	-				-1.7
2,789,344	-				+0.5
2,789,344	-				+1.9
2,789,380	+				+1.0
2,789,380	+				-0.3
2,789,381	-				-0.3
2,789,381	-				-0.7
2,789,393	+				+0.2
2,789,394	-				+1.7
2,789,394	-				-0.9
2,789,394	-				-1.3
2,789,408	+				-0.0
2,789,408	+				+0.3
2,789,409	-				+0.0
2,789,409	-				+2.3
2,789,412	+				-0.7
2,789,412	+				+0.6
2,789,412	+				+0.3
2,789,412	+				+0.4
2,789,413	-				+1.7
2,789,413	-				+2.0
2,789,422	+				-1.1
2,789,423	-				+0.6
2,789,423	-				+0.3
2,789,426	+				+0.4
2,789,426	+				+0.3
2,789,426	+				+0.5
2,789,426	+				+0.2
2,789,426	+				+1.4
2,789,426	+				-1.3
2,789,426	+				+0.4
2,789,426	+				-0.4
2,789,426	+				+1.1
2,789,426	+				-0.3
2,789,426	+				-0.1
2,789,426	+				-0.8
2,789,427	-				+0.0
2,789,427	-				-0.1
2,789,427	-				-0.1
2,789,427	-				+1.5
2,789,427	-				-0.6
2,789,427	-				+1.3
2,789,427	-				+1.1
2,789,544	+				-0.8
2,789,544	+				+0.7
2,789,544	+				+0.1
2,789,544	+				+0.7
2,789,544	+				+0.3
2,789,545	-				+0.2
2,789,545	-				+0.5
2,789,545	-				+1.4
2,789,545	-				+0.9
2,789,546	+				-1.3
2,789,546	+				+0.3
2,789,546	+				+0.1
2,789,546	+				+0.8
2,789,546	+				-0.1
2,789,546	+				+1.3
2,789,546	+				+0.4
2,789,546	+				+2.5
2,789,546	+				-1.4
2,789,546	+				+0.3
2,789,547	-				+1.3
2,789,547	-				+0.7
2,789,547	-				+1.0
2,789,547	-				+1.5
2,789,547	-				-1.1
2,789,547	-				+0.7
2,789,547	-				-0.9
2,789,574	+				+0.8
2,789,574	+				-0.5
2,789,574	+				-0.3
2,789,575	-				+1.9
2,789,575	-				-0.9
2,789,575	-				+0.3
2,789,575	-				-0.3
2,789,701	-				+0.1
2,789,737	+				+0.4
2,789,737	+				-0.7
2,789,742	+				+0.6
2,789,743	-				-0.5
2,789,743	-				-1.3
2,789,788	+				+0.9
2,789,789	-				-0.8
2,789,856	+				+0.1
2,789,856	+				-0.4
2,789,856	+				-0.7
2,789,856	+				-0.3
2,789,857	-				+1.1
2,789,857	-				-0.5
2,789,867	+				+0.8
2,789,910	-				+0.3
2,789,915	-				+0.1
2,789,933	+				+0.1
2,789,933	+				+1.0
2,789,934	-				+0.2
2,790,001	+				+1.3
2,790,002	-				-1.8
2,790,002	-				-0.0
2,790,004	+				-1.3
2,790,004	+				+0.6
2,790,005	-				+0.5
2,790,008	+				+0.9
2,790,009	-				+0.2
2,790,009	-				-1.2
2,790,031	+				+0.1
2,790,031	+				+0.9
2,790,031	+				+1.5
2,790,031	+				-0.3
2,790,031	+				-0.2
2,790,032	-				+0.7
2,790,032	-				+1.5
2,790,032	-				+0.3
2,790,075	+				-2.1
2,790,110	+				-1.2
2,790,135	+				+1.0
2,790,135	+				+2.9
2,790,135	+				+0.5
2,790,136	-				+0.4
2,790,136	-				-0.5
2,790,136	-				+0.7
2,790,136	-				-0.1
2,790,136	-				-1.6
2,790,136	-				+1.4
2,790,148	+				-0.4
2,790,148	+				-0.9
2,790,149	-				-0.5
2,790,149	-				+1.0
2,790,178	+				+0.5
2,790,179	-				+1.8
2,790,211	+				-1.5
2,790,212	-				-0.8
2,790,231	+				+0.8
2,790,231	+				-0.8
2,790,237	+				-1.1
2,790,257	+				-0.4
2,790,258	-				-0.9
2,790,263	+				-0.5
2,790,263	+				+0.7
2,790,263	+				+0.1
2,790,264	-				+1.0
2,790,264	-				+0.2
2,790,292	-				-0.5
2,790,315	+				+0.4
2,790,315	+				-1.9
2,790,316	-				+0.9
2,790,316	-				-0.3
2,790,316	-				-0.2
2,790,316	-				-1.1
2,790,316	-				-0.6
2,790,316	-				-2.4
2,790,323	-				+1.0
2,790,335	+				+0.2