Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08330

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
1,815,035	+		LRK54_RS08320	0.66	-1.6
1,815,035	+		LRK54_RS08320	0.66	-1.3
1,815,035	+		LRK54_RS08320	0.66	-0.2
1,815,035	+		LRK54_RS08320	0.66	-1.8
1,815,035	+		LRK54_RS08320	0.66	-1.3
1,815,035	+		LRK54_RS08320	0.66	+0.1
1,815,036	-		LRK54_RS08320	0.66	-0.4
1,815,036	-		LRK54_RS08320	0.66	-0.2
1,815,074	+		LRK54_RS08320	0.70	-0.8
1,815,074	+		LRK54_RS08320	0.70	-0.8
1,815,074	+		LRK54_RS08320	0.70	-0.5
1,815,074	+		LRK54_RS08320	0.70	-1.2
1,815,074	+		LRK54_RS08320	0.70	-0.3
1,815,074	+		LRK54_RS08320	0.70	-1.5
1,815,074	+		LRK54_RS08320	0.70	+0.5
1,815,074	+		LRK54_RS08320	0.70	-0.3
1,815,074	+		LRK54_RS08320	0.70	-0.1
1,815,074	+		LRK54_RS08320	0.70	-0.8
1,815,074	+		LRK54_RS08320	0.70	-1.7
1,815,074	+		LRK54_RS08320	0.70	+0.0
1,815,075	-		LRK54_RS08320	0.70	+1.5
1,815,075	-		LRK54_RS08320	0.70	+0.8
1,815,075	-		LRK54_RS08320	0.70	-0.5
1,815,075	-		LRK54_RS08320	0.70	-1.1
1,815,075	-		LRK54_RS08320	0.70	-0.8
1,815,075	-		LRK54_RS08320	0.70	-0.9
1,815,075	-		LRK54_RS08320	0.70	-0.6
1,815,075	-		LRK54_RS08320	0.70	+0.3
1,815,075	-		LRK54_RS08320	0.70	-0.6
1,815,075	-		LRK54_RS08320	0.70	-0.2
1,815,075	-		LRK54_RS08320	0.70	-0.3
1,815,075	-		LRK54_RS08320	0.70	-0.1
1,815,155	+		LRK54_RS08320	0.79	-1.6
1,815,155	+		LRK54_RS08320	0.79	-2.1
1,815,155	+		LRK54_RS08320	0.79	-1.3
1,815,155	+		LRK54_RS08320	0.79	-0.8
1,815,155	+		LRK54_RS08320	0.79	+0.1
1,815,155	+		LRK54_RS08320	0.79	-1.1
1,815,155	+		LRK54_RS08320	0.79	-0.4
1,815,155	+		LRK54_RS08320	0.79	-1.6
1,815,155	+		LRK54_RS08320	0.79	-0.7
1,815,155	+		LRK54_RS08320	0.79	-1.4
1,815,156	-		LRK54_RS08320	0.79	-0.7
1,815,156	-		LRK54_RS08320	0.79	-2.1
1,815,156	-		LRK54_RS08320	0.79	-0.7
1,815,156	-		LRK54_RS08320	0.79	-1.8
1,815,156	-		LRK54_RS08320	0.79	-0.3
1,815,156	-		LRK54_RS08320	0.79	+0.1
1,815,156	-		LRK54_RS08320	0.79	-0.4
1,815,156	-		LRK54_RS08320	0.79	-1.5
1,815,156	-		LRK54_RS08320	0.79	-0.4
1,815,156	-		LRK54_RS08320	0.79	-2.1
1,815,156	-		LRK54_RS08320	0.79	-0.4
1,815,156	-		LRK54_RS08320	0.79	-0.4
1,815,156	-		LRK54_RS08320	0.79	-0.1
1,815,156	-		LRK54_RS08320	0.79	-0.7
1,815,167	+		LRK54_RS08320	0.80	-0.1
1,815,167	+		LRK54_RS08320	0.80	-0.1
1,815,167	+		LRK54_RS08320	0.80	-0.8
1,815,167	+		LRK54_RS08320	0.80	-0.8
1,815,167	+		LRK54_RS08320	0.80	+0.4
1,815,167	+		LRK54_RS08320	0.80	-0.6
1,815,167	+		LRK54_RS08320	0.80	-1.0
1,815,167	+		LRK54_RS08320	0.80	-0.6
1,815,167	+		LRK54_RS08320	0.80	-1.2
1,815,167	+		LRK54_RS08320	0.80	-1.0
1,815,167	+		LRK54_RS08320	0.80	-0.3
1,815,167	+		LRK54_RS08320	0.80	-0.0
1,815,167	+		LRK54_RS08320	0.80	-1.3
1,815,167	+		LRK54_RS08320	0.80	-0.0
1,815,167	+		LRK54_RS08320	0.80	-1.5
1,815,167	-		LRK54_RS08320	0.80	+0.4
1,815,168	-		LRK54_RS08320	0.81	+0.6
1,815,168	-		LRK54_RS08320	0.81	-1.9
1,815,168	-		LRK54_RS08320	0.81	+0.8
1,815,168	-		LRK54_RS08320	0.81	-0.9
1,815,168	-		LRK54_RS08320	0.81	-0.0
1,815,168	-		LRK54_RS08320	0.81	-0.4
1,815,168	-		LRK54_RS08320	0.81	-0.9
1,815,168	-		LRK54_RS08320	0.81	+0.1
1,815,168	-		LRK54_RS08320	0.81	+0.0
1,815,168	-		LRK54_RS08320	0.81	-1.4
1,815,168	-		LRK54_RS08320	0.81	-0.9
1,815,230	+		LRK54_RS08320	0.88	-3.2
1,815,230	+		LRK54_RS08320	0.88	+0.6
1,815,230	+		LRK54_RS08320	0.88	+0.5
1,815,230	+		LRK54_RS08320	0.88	-0.3
1,815,231	-		LRK54_RS08320	0.88	+0.7
1,815,231	-		LRK54_RS08320	0.88	-0.2
1,815,231	-		LRK54_RS08320	0.88	-0.5
1,815,231	-		LRK54_RS08320	0.88	-0.5
1,815,231	-		LRK54_RS08320	0.88	-0.1
1,815,231	-		LRK54_RS08320	0.88	+1.1
1,815,231	-		LRK54_RS08320	0.88	+0.5
1,815,231	-		LRK54_RS08320	0.88	+0.1
1,815,231	-		LRK54_RS08320	0.88	+0.4
1,815,231	-		LRK54_RS08320	0.88	-0.5
1,815,334	+				+0.1
1,815,335	-				-0.1
1,815,335	-				-0.0
1,815,402	+				+0.5
1,815,402	+				+1.1
1,815,402	+				-0.5
1,815,402	+				+0.1
1,815,402	+				-0.8
1,815,403	-				+1.3
1,815,403	-				+0.4
1,815,481	+		LRK54_RS08325	0.19	+0.3
1,815,481	+		LRK54_RS08325	0.19	+0.3
1,815,495	+		LRK54_RS08325	0.21	+0.9
1,815,495	+		LRK54_RS08325	0.21	+1.4
1,815,496	-		LRK54_RS08325	0.21	-1.1
1,815,496	-		LRK54_RS08325	0.21	-0.4
1,815,496	-		LRK54_RS08325	0.21	+0.7
1,815,522	+		LRK54_RS08325	0.25	-0.4
1,815,522	+		LRK54_RS08325	0.25	+0.6
1,815,522	+		LRK54_RS08325	0.25	+1.4
1,815,522	+		LRK54_RS08325	0.25	-0.8
1,815,522	+		LRK54_RS08325	0.25	+1.1
1,815,522	+		LRK54_RS08325	0.25	+0.6
1,815,522	+		LRK54_RS08325	0.25	-0.5
1,815,522	+		LRK54_RS08325	0.25	-1.0
1,815,522	+		LRK54_RS08325	0.25	+0.6
1,815,522	+		LRK54_RS08325	0.25	-3.4
1,815,522	+		LRK54_RS08325	0.25	+0.1
1,815,522	+		LRK54_RS08325	0.25	+0.5
1,815,523	-		LRK54_RS08325	0.25	+0.4
1,815,523	-		LRK54_RS08325	0.25	+0.8
1,815,523	-		LRK54_RS08325	0.25	-1.0
1,815,523	-		LRK54_RS08325	0.25	-0.9
1,815,523	-		LRK54_RS08325	0.25	-0.3
1,815,523	-		LRK54_RS08325	0.25	-0.8
1,815,523	-		LRK54_RS08325	0.25	-0.5
1,815,711	+		LRK54_RS08325	0.53	+0.6
1,815,711	+		LRK54_RS08325	0.53	-0.3
1,815,711	+		LRK54_RS08325	0.53	-0.4
1,815,711	+		LRK54_RS08325	0.53	-0.1
1,815,711	+		LRK54_RS08325	0.53	+0.6
1,815,711	+		LRK54_RS08325	0.53	+0.1
1,815,711	+		LRK54_RS08325	0.53	-1.5
1,815,711	+		LRK54_RS08325	0.53	-0.8
1,815,712	-		LRK54_RS08325	0.53	+0.1
1,815,712	-		LRK54_RS08325	0.53	-2.0
1,815,712	-		LRK54_RS08325	0.53	+0.3
1,815,712	-		LRK54_RS08325	0.53	-0.1
1,815,712	-		LRK54_RS08325	0.53	-1.9
1,815,712	-		LRK54_RS08325	0.53	+0.2
1,815,712	-		LRK54_RS08325	0.53	-0.5
1,815,712	-		LRK54_RS08325	0.53	+0.2
1,815,712	-		LRK54_RS08325	0.53	-0.1
1,815,735	+		LRK54_RS08325	0.56	-2.7
1,815,735	+		LRK54_RS08325	0.56	-1.4
1,815,736	-		LRK54_RS08325	0.56	+1.4
1,815,736	-		LRK54_RS08325	0.56	-0.2
1,816,124	+		LRK54_RS08330	0.13	-0.3
1,816,124	+		LRK54_RS08330	0.13	+1.9
1,816,125	-		LRK54_RS08330	0.14	+0.3
1,816,214	+		LRK54_RS08330	0.26	-0.1
1,816,215	-		LRK54_RS08330	0.26	-0.1
1,816,215	-		LRK54_RS08330	0.26	+0.8
1,816,215	-		LRK54_RS08330	0.26	+0.3
1,816,215	-		LRK54_RS08330	0.26	+0.6
1,816,215	-		LRK54_RS08330	0.26	-0.6
1,816,215	-		LRK54_RS08330	0.26	+0.6
1,816,272	+		LRK54_RS08330	0.34	+0.8
1,816,272	+		LRK54_RS08330	0.34	+0.9
1,816,272	+		LRK54_RS08330	0.34	-1.4
1,816,272	+		LRK54_RS08330	0.34	-0.5
1,816,273	-		LRK54_RS08330	0.34	-0.2
1,816,273	-		LRK54_RS08330	0.34	+0.1
1,816,273	-		LRK54_RS08330	0.34	-0.6
1,816,274	+		LRK54_RS08330	0.34	-0.7
1,816,274	+		LRK54_RS08330	0.34	+0.3
1,816,274	+		LRK54_RS08330	0.34	-0.8
1,816,274	+		LRK54_RS08330	0.34	-0.8
1,816,274	+		LRK54_RS08330	0.34	+0.4
1,816,274	+		LRK54_RS08330	0.34	+0.4
1,816,274	+		LRK54_RS08330	0.34	+0.2
1,816,274	+		LRK54_RS08330	0.34	-2.1
1,816,274	+		LRK54_RS08330	0.34	-1.7
1,816,274	+		LRK54_RS08330	0.34	+0.5
1,816,275	-		LRK54_RS08330	0.34	+0.4
1,816,275	-		LRK54_RS08330	0.34	+2.2
1,816,347	-		LRK54_RS08330	0.44	-1.1
1,816,409	+		LRK54_RS08330	0.53	-1.8
1,816,409	+		LRK54_RS08330	0.53	-0.1
1,816,409	+		LRK54_RS08330	0.53	-1.0
1,816,409	+		LRK54_RS08330	0.53	+0.7
1,816,409	+		LRK54_RS08330	0.53	-0.9
1,816,409	+		LRK54_RS08330	0.53	-0.4
1,816,409	+		LRK54_RS08330	0.53	-0.1
1,816,409	+		LRK54_RS08330	0.53	+1.3
1,816,410	-		LRK54_RS08330	0.53	+1.0
1,816,410	-		LRK54_RS08330	0.53	-0.2
1,816,410	-		LRK54_RS08330	0.53	-0.4
1,816,410	-		LRK54_RS08330	0.53	-1.0
1,816,410	-		LRK54_RS08330	0.53	+1.8
1,816,410	-		LRK54_RS08330	0.53	-1.0
1,816,410	-		LRK54_RS08330	0.53	-1.6
1,816,410	-		LRK54_RS08330	0.53	-0.3
1,816,410	-		LRK54_RS08330	0.53	+0.1
1,816,410	-		LRK54_RS08330	0.53	+0.6
1,816,410	-		LRK54_RS08330	0.53	+0.5
1,816,451	+		LRK54_RS08330	0.59	-0.9
1,816,451	+		LRK54_RS08330	0.59	-0.6
1,816,451	+		LRK54_RS08330	0.59	+0.4
1,816,451	+		LRK54_RS08330	0.59	+0.1
1,816,451	+		LRK54_RS08330	0.59	-0.4
1,816,451	+		LRK54_RS08330	0.59	-2.2
1,816,451	+		LRK54_RS08330	0.59	-0.6
1,816,452	-		LRK54_RS08330	0.59	+1.4
1,816,452	-		LRK54_RS08330	0.59	+0.6
1,816,452	-		LRK54_RS08330	0.59	-0.0
1,816,661	+		LRK54_RS08330	0.88	+0.6
1,816,661	+		LRK54_RS08330	0.88	-0.3
1,816,661	+		LRK54_RS08330	0.88	-0.7
1,816,661	+		LRK54_RS08330	0.88	+0.4
1,816,661	+		LRK54_RS08330	0.88	-1.7
1,816,661	+		LRK54_RS08330	0.88	-0.2
1,816,661	+		LRK54_RS08330	0.88	-0.2
1,816,662	-		LRK54_RS08330	0.88	-2.3
1,816,662	-		LRK54_RS08330	0.88	+0.5
1,816,662	-		LRK54_RS08330	0.88	-2.3
1,816,662	-		LRK54_RS08330	0.88	-3.5
1,816,662	-		LRK54_RS08330	0.88	-2.2
1,816,662	-		LRK54_RS08330	0.88	-0.1
1,816,662	-		LRK54_RS08330	0.88	-2.6
1,816,662	-		LRK54_RS08330	0.88	+0.6
1,816,701	-				+0.3
1,816,701	-				-1.5
1,816,701	-				+1.0
1,816,874	+				+0.2
1,816,874	+				-0.1
1,816,874	+				-0.6
1,816,874	+				+0.2
1,816,874	+				-0.9
1,816,874	+				-0.4
1,816,874	+				+0.3
1,816,874	+				+1.7
1,816,875	-				+0.5
1,816,875	-				-2.1
1,816,875	-				-0.4
1,816,875	-				+0.1
1,816,875	-				+2.4
1,816,875	-				-0.6
1,816,875	-				-0.9
1,816,912	+				-1.5
1,816,920	+				+0.8
1,816,920	+				-0.1
1,816,920	+				-0.4
1,816,921	-				-1.1
1,816,921	-				+0.4
1,816,921	-				+1.6
1,816,921	-				-1.4
1,816,921	-				-0.8
1,816,927	+				+0.1
1,816,927	+				-1.8
1,816,927	+				+1.1
1,816,927	+				+1.4
1,816,927	+				-1.6
1,817,074	+		LRK54_RS08335	0.45	+0.9
1,817,074	+		LRK54_RS08335	0.45	-0.4
1,817,074	+		LRK54_RS08335	0.45	-1.7
1,817,074	+		LRK54_RS08335	0.45	+0.1
1,817,074	+		LRK54_RS08335	0.45	-0.5
1,817,074	+		LRK54_RS08335	0.45	-2.4
1,817,134	+		LRK54_RS08335	0.59	-1.2
1,817,134	+		LRK54_RS08335	0.59	-2.6
1,817,134	+		LRK54_RS08335	0.59	-0.7
1,817,134	+		LRK54_RS08335	0.59	-1.7
1,817,134	+		LRK54_RS08335	0.59	-0.7
1,817,134	+		LRK54_RS08335	0.59	+0.4
1,817,134	+		LRK54_RS08335	0.59	+2.4
1,817,134	+		LRK54_RS08335	0.59	-1.6
1,817,257	+		LRK54_RS08335	0.89	+2.4
1,817,258	-		LRK54_RS08335	0.90	-0.5
1,817,325	-				-0.0
1,817,325	-				+1.0
1,817,328	+				-1.6
1,817,329	-				-1.6
1,817,337	-				-0.5
1,817,422	+				-2.1
1,817,422	+				-0.0
1,817,422	+				-0.4
1,817,423	-				-0.0
1,817,423	-				+1.1
1,817,587	+		LRK54_RS08340	0.12	+0.8
1,817,587	+		LRK54_RS08340	0.12	-0.9
1,817,588	-		LRK54_RS08340	0.12	-0.2
1,817,588	-		LRK54_RS08340	0.12	-0.6
1,817,588	-		LRK54_RS08340	0.12	-0.7
1,817,599	+		LRK54_RS08340	0.12	-1.4
1,817,599	+		LRK54_RS08340	0.12	-0.2
1,817,599	+		LRK54_RS08340	0.12	-0.3
1,817,599	+		LRK54_RS08340	0.12	-0.8
1,817,599	+		LRK54_RS08340	0.12	-1.2
1,817,599	+		LRK54_RS08340	0.12	-0.8
1,817,629	+		LRK54_RS08340	0.14	-1.1
1,817,629	+		LRK54_RS08340	0.14	+1.2
1,817,629	+		LRK54_RS08340	0.14	-1.4
1,817,629	+		LRK54_RS08340	0.14	+0.2
1,817,629	+		LRK54_RS08340	0.14	-0.5
1,817,629	+		LRK54_RS08340	0.14	+0.0
1,817,629	+		LRK54_RS08340	0.14	-0.1
1,817,629	+		LRK54_RS08340	0.14	-0.6
1,817,629	+		LRK54_RS08340	0.14	-0.0
1,817,629	+		LRK54_RS08340	0.14	+0.4
1,817,629	+		LRK54_RS08340	0.14	+0.2
1,817,630	-		LRK54_RS08340	0.14	+1.0
1,817,630	-		LRK54_RS08340	0.14	-0.2
1,817,630	-		LRK54_RS08340	0.14	-0.2
1,817,630	-		LRK54_RS08340	0.14	-0.2
1,817,630	-		LRK54_RS08340	0.14	-0.2
1,817,686	+		LRK54_RS08340	0.17	-0.5
1,817,686	+		LRK54_RS08340	0.17	-1.8
1,817,686	+		LRK54_RS08340	0.17	+0.4
1,817,686	+		LRK54_RS08340	0.17	-0.4
1,817,687	-		LRK54_RS08340	0.17	-0.2
1,817,687	-		LRK54_RS08340	0.17	-0.7
1,817,687	-		LRK54_RS08340	0.17	+0.2