Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS07415 and LRK54_RS07420 overlap by 4 nucleotides LRK54_RS07420 and LRK54_RS07425 are separated by 1 nucleotides LRK54_RS07425 and LRK54_RS07430 are separated by 49 nucleotides LRK54_RS07430 and LRK54_RS07435 are separated by 17 nucleotides
LRK54_RS07415: LRK54_RS07415 - YCF48-related protein, at 1,599,145 to 1,600,128
_RS07415
LRK54_RS07420: LRK54_RS07420 - hydroxymethylglutaryl-CoA lyase, at 1,600,125 to 1,601,051
_RS07420
LRK54_RS07425: LRK54_RS07425 - CoA transferase, at 1,601,053 to 1,602,252
_RS07425
LRK54_RS07430: LRK54_RS07430 - nuclear transport factor 2 family protein, at 1,602,302 to 1,602,694
_RS07430
LRK54_RS07435: LRK54_RS07435 - aspartate/glutamate racemase family protein, at 1,602,712 to 1,603,458
_RS07435
Position (kb) 1601
1602
1603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.053 kb on - strand at 1600.064 kb on + strand at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.398 kb on + strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.399 kb on - strand, within LRK54_RS07420 at 1600.400 kb on + strand, within LRK54_RS07420 at 1600.400 kb on + strand, within LRK54_RS07420 at 1600.400 kb on + strand, within LRK54_RS07420 at 1600.400 kb on + strand, within LRK54_RS07420 at 1600.400 kb on + strand, within LRK54_RS07420 at 1600.400 kb on + strand, within LRK54_RS07420 at 1600.401 kb on - strand, within LRK54_RS07420 at 1600.401 kb on - strand, within LRK54_RS07420 at 1600.401 kb on - strand, within LRK54_RS07420 at 1600.401 kb on - strand, within LRK54_RS07420 at 1600.401 kb on - strand, within LRK54_RS07420 at 1600.401 kb on - strand, within LRK54_RS07420 at 1600.606 kb on + strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.607 kb on - strand, within LRK54_RS07420 at 1600.618 kb on + strand, within LRK54_RS07420 at 1600.618 kb on + strand, within LRK54_RS07420 at 1600.618 kb on + strand, within LRK54_RS07420 at 1600.619 kb on - strand, within LRK54_RS07420 at 1600.619 kb on - strand, within LRK54_RS07420 at 1600.619 kb on - strand, within LRK54_RS07420 at 1600.633 kb on + strand, within LRK54_RS07420 at 1600.633 kb on + strand, within LRK54_RS07420 at 1600.633 kb on + strand, within LRK54_RS07420 at 1600.633 kb on + strand, within LRK54_RS07420 at 1600.633 kb on + strand, within LRK54_RS07420 at 1600.634 kb on - strand, within LRK54_RS07420 at 1600.634 kb on - strand, within LRK54_RS07420 at 1600.634 kb on - strand, within LRK54_RS07420 at 1600.634 kb on - strand, within LRK54_RS07420 at 1600.634 kb on - strand, within LRK54_RS07420 at 1600.634 kb on - strand, within LRK54_RS07420 at 1600.796 kb on - strand, within LRK54_RS07420 at 1600.796 kb on - strand, within LRK54_RS07420 at 1600.825 kb on + strand, within LRK54_RS07420 at 1600.825 kb on + strand, within LRK54_RS07420 at 1600.825 kb on + strand, within LRK54_RS07420 at 1600.826 kb on - strand, within LRK54_RS07420 at 1600.826 kb on - strand, within LRK54_RS07420 at 1600.826 kb on - strand, within LRK54_RS07420 at 1600.984 kb on - strand at 1601.034 kb on + strand at 1601.034 kb on + strand at 1601.034 kb on + strand at 1601.034 kb on + strand at 1601.034 kb on + strand at 1601.034 kb on + strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.035 kb on - strand at 1601.102 kb on + strand at 1601.103 kb on - strand at 1601.122 kb on + strand at 1601.122 kb on + strand at 1601.122 kb on + strand at 1601.122 kb on + strand at 1601.123 kb on - strand at 1601.123 kb on - strand at 1601.123 kb on - strand at 1601.123 kb on - strand at 1601.123 kb on - strand at 1601.134 kb on - strand at 1601.134 kb on - strand at 1601.391 kb on + strand, within LRK54_RS07425 at 1601.452 kb on + strand, within LRK54_RS07425 at 1601.454 kb on + strand, within LRK54_RS07425 at 1601.531 kb on + strand, within LRK54_RS07425 at 1601.531 kb on + strand, within LRK54_RS07425 at 1601.532 kb on - strand, within LRK54_RS07425 at 1601.532 kb on - strand, within LRK54_RS07425 at 1601.532 kb on - strand, within LRK54_RS07425 at 1601.532 kb on - strand, within LRK54_RS07425 at 1601.532 kb on - strand, within LRK54_RS07425 at 1601.532 kb on - strand, within LRK54_RS07425 at 1601.540 kb on + strand, within LRK54_RS07425 at 1601.541 kb on - strand, within LRK54_RS07425 at 1601.615 kb on + strand, within LRK54_RS07425 at 1601.615 kb on + strand, within LRK54_RS07425 at 1601.616 kb on - strand, within LRK54_RS07425 at 1601.616 kb on - strand, within LRK54_RS07425 at 1601.693 kb on - strand, within LRK54_RS07425 at 1601.705 kb on - strand, within LRK54_RS07425 at 1601.705 kb on - strand, within LRK54_RS07425 at 1601.705 kb on - strand, within LRK54_RS07425 at 1601.843 kb on + strand, within LRK54_RS07425 at 1601.843 kb on + strand, within LRK54_RS07425 at 1601.843 kb on + strand, within LRK54_RS07425 at 1601.843 kb on + strand, within LRK54_RS07425 at 1601.843 kb on + strand, within LRK54_RS07425 at 1601.844 kb on - strand, within LRK54_RS07425 at 1601.844 kb on - strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.883 kb on + strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.884 kb on - strand, within LRK54_RS07425 at 1601.979 kb on + strand, within LRK54_RS07425 at 1601.980 kb on - strand, within LRK54_RS07425 at 1602.030 kb on + strand, within LRK54_RS07425 at 1602.031 kb on - strand, within LRK54_RS07425 at 1602.031 kb on - strand, within LRK54_RS07425 at 1602.031 kb on - strand, within LRK54_RS07425 at 1602.037 kb on - strand, within LRK54_RS07425 at 1602.037 kb on - strand, within LRK54_RS07425 at 1602.068 kb on + strand, within LRK54_RS07425 at 1602.068 kb on + strand, within LRK54_RS07425 at 1602.207 kb on + strand at 1602.207 kb on + strand at 1602.224 kb on - strand at 1602.226 kb on - strand at 1602.337 kb on - strand at 1602.543 kb on - strand, within LRK54_RS07430 at 1602.543 kb on - strand, within LRK54_RS07430 at 1602.609 kb on - strand, within LRK54_RS07430 at 1602.609 kb on - strand, within LRK54_RS07430 at 1602.609 kb on - strand, within LRK54_RS07430 at 1602.646 kb on - strand, within LRK54_RS07430 at 1602.646 kb on - strand, within LRK54_RS07430 at 1602.731 kb on + strand at 1602.731 kb on + strand at 1602.732 kb on - strand at 1602.732 kb on - strand at 1603.056 kb on - strand, within LRK54_RS07435 at 1603.076 kb on + strand, within LRK54_RS07435 at 1603.076 kb on + strand, within LRK54_RS07435 at 1603.077 kb on - strand, within LRK54_RS07435 at 1603.077 kb on - strand, within LRK54_RS07435 at 1603.241 kb on + strand, within LRK54_RS07435 at 1603.241 kb on + strand, within LRK54_RS07435 at 1603.241 kb on + strand, within LRK54_RS07435
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.15625 mM remove 1,600,053 - +0.2 1,600,053 - +0.2 1,600,053 - +0.1 1,600,053 - -0.2 1,600,053 - -1.7 1,600,053 - -0.7 1,600,053 - -0.9 1,600,053 - +0.4 1,600,053 - +0.3 1,600,053 - -1.4 1,600,053 - -0.7 1,600,053 - +0.9 1,600,053 - -1.1 1,600,053 - -0.3 1,600,053 - +1.0 1,600,064 + +0.1 1,600,398 + LRK54_RS07420 0.29 -0.7 1,600,398 + LRK54_RS07420 0.29 -0.1 1,600,398 + LRK54_RS07420 0.29 -0.5 1,600,398 + LRK54_RS07420 0.29 -1.9 1,600,398 + LRK54_RS07420 0.29 -0.8 1,600,398 + LRK54_RS07420 0.29 -0.5 1,600,398 + LRK54_RS07420 0.29 -0.5 1,600,398 + LRK54_RS07420 0.29 +0.8 1,600,398 + LRK54_RS07420 0.29 -1.9 1,600,399 - LRK54_RS07420 0.30 -1.5 1,600,399 - LRK54_RS07420 0.30 +0.9 1,600,399 - LRK54_RS07420 0.30 -0.7 1,600,399 - LRK54_RS07420 0.30 +0.1 1,600,399 - LRK54_RS07420 0.30 +0.1 1,600,399 - LRK54_RS07420 0.30 -1.4 1,600,399 - LRK54_RS07420 0.30 +0.9 1,600,399 - LRK54_RS07420 0.30 +1.0 1,600,399 - LRK54_RS07420 0.30 -0.2 1,600,399 - LRK54_RS07420 0.30 -2.4 1,600,399 - LRK54_RS07420 0.30 -2.3 1,600,399 - LRK54_RS07420 0.30 +1.3 1,600,399 - LRK54_RS07420 0.30 -0.3 1,600,399 - LRK54_RS07420 0.30 +0.7 1,600,399 - LRK54_RS07420 0.30 +1.1 1,600,399 - LRK54_RS07420 0.30 -1.6 1,600,399 - LRK54_RS07420 0.30 -0.6 1,600,399 - LRK54_RS07420 0.30 -0.8 1,600,399 - LRK54_RS07420 0.30 -0.2 1,600,400 + LRK54_RS07420 0.30 -0.1 1,600,400 + LRK54_RS07420 0.30 +0.7 1,600,400 + LRK54_RS07420 0.30 +1.1 1,600,400 + LRK54_RS07420 0.30 -1.1 1,600,400 + LRK54_RS07420 0.30 -0.5 1,600,400 + LRK54_RS07420 0.30 +0.2 1,600,401 - LRK54_RS07420 0.30 -0.1 1,600,401 - LRK54_RS07420 0.30 -1.7 1,600,401 - LRK54_RS07420 0.30 +0.3 1,600,401 - LRK54_RS07420 0.30 +0.7 1,600,401 - LRK54_RS07420 0.30 +0.3 1,600,401 - LRK54_RS07420 0.30 +1.0 1,600,606 + LRK54_RS07420 0.52 -0.6 1,600,607 - LRK54_RS07420 0.52 -1.6 1,600,607 - LRK54_RS07420 0.52 +0.0 1,600,607 - LRK54_RS07420 0.52 -0.3 1,600,607 - LRK54_RS07420 0.52 -0.7 1,600,607 - LRK54_RS07420 0.52 -0.1 1,600,607 - LRK54_RS07420 0.52 +0.0 1,600,607 - LRK54_RS07420 0.52 -1.0 1,600,618 + LRK54_RS07420 0.53 -0.3 1,600,618 + LRK54_RS07420 0.53 -0.7 1,600,618 + LRK54_RS07420 0.53 +1.1 1,600,619 - LRK54_RS07420 0.53 +1.2 1,600,619 - LRK54_RS07420 0.53 -0.3 1,600,619 - LRK54_RS07420 0.53 -0.7 1,600,633 + LRK54_RS07420 0.55 -0.3 1,600,633 + LRK54_RS07420 0.55 -1.8 1,600,633 + LRK54_RS07420 0.55 -0.3 1,600,633 + LRK54_RS07420 0.55 -1.4 1,600,633 + LRK54_RS07420 0.55 -0.8 1,600,634 - LRK54_RS07420 0.55 -1.1 1,600,634 - LRK54_RS07420 0.55 -0.4 1,600,634 - LRK54_RS07420 0.55 -1.5 1,600,634 - LRK54_RS07420 0.55 -0.3 1,600,634 - LRK54_RS07420 0.55 -2.2 1,600,634 - LRK54_RS07420 0.55 -0.8 1,600,796 - LRK54_RS07420 0.72 -0.5 1,600,796 - LRK54_RS07420 0.72 -0.5 1,600,825 + LRK54_RS07420 0.76 -0.7 1,600,825 + LRK54_RS07420 0.76 +1.5 1,600,825 + LRK54_RS07420 0.76 -0.3 1,600,826 - LRK54_RS07420 0.76 +0.9 1,600,826 - LRK54_RS07420 0.76 +0.2 1,600,826 - LRK54_RS07420 0.76 -0.5 1,600,984 - -1.3 1,601,034 + +0.2 1,601,034 + +0.4 1,601,034 + -2.2 1,601,034 + -0.5 1,601,034 + -0.5 1,601,034 + +0.5 1,601,035 - -1.0 1,601,035 - -1.1 1,601,035 - +2.1 1,601,035 - +1.2 1,601,035 - -0.0 1,601,035 - -0.6 1,601,035 - -1.7 1,601,035 - -0.2 1,601,102 + -1.4 1,601,103 - +0.5 1,601,122 + -1.0 1,601,122 + -0.2 1,601,122 + -1.4 1,601,122 + +0.0 1,601,123 - -1.5 1,601,123 - -0.3 1,601,123 - +0.4 1,601,123 - -3.1 1,601,123 - -0.1 1,601,134 - +2.3 1,601,134 - +1.3 1,601,391 + LRK54_RS07425 0.28 -1.4 1,601,452 + LRK54_RS07425 0.33 -1.0 1,601,454 + LRK54_RS07425 0.33 +0.9 1,601,531 + LRK54_RS07425 0.40 +1.3 1,601,531 + LRK54_RS07425 0.40 -1.8 1,601,532 - LRK54_RS07425 0.40 -0.7 1,601,532 - LRK54_RS07425 0.40 -1.1 1,601,532 - LRK54_RS07425 0.40 -0.6 1,601,532 - LRK54_RS07425 0.40 -0.5 1,601,532 - LRK54_RS07425 0.40 -1.2 1,601,532 - LRK54_RS07425 0.40 +2.3 1,601,540 + LRK54_RS07425 0.41 +0.2 1,601,541 - LRK54_RS07425 0.41 -2.1 1,601,615 + LRK54_RS07425 0.47 +0.4 1,601,615 + LRK54_RS07425 0.47 +0.5 1,601,616 - LRK54_RS07425 0.47 -0.2 1,601,616 - LRK54_RS07425 0.47 +0.3 1,601,693 - LRK54_RS07425 0.53 +0.3 1,601,705 - LRK54_RS07425 0.54 -1.1 1,601,705 - LRK54_RS07425 0.54 -0.4 1,601,705 - LRK54_RS07425 0.54 +0.4 1,601,843 + LRK54_RS07425 0.66 -1.8 1,601,843 + LRK54_RS07425 0.66 -0.3 1,601,843 + LRK54_RS07425 0.66 -0.8 1,601,843 + LRK54_RS07425 0.66 -1.9 1,601,843 + LRK54_RS07425 0.66 -1.2 1,601,844 - LRK54_RS07425 0.66 -1.2 1,601,844 - LRK54_RS07425 0.66 -0.4 1,601,883 + LRK54_RS07425 0.69 +0.2 1,601,883 + LRK54_RS07425 0.69 -0.1 1,601,883 + LRK54_RS07425 0.69 -0.3 1,601,883 + LRK54_RS07425 0.69 -0.2 1,601,883 + LRK54_RS07425 0.69 -1.6 1,601,883 + LRK54_RS07425 0.69 -1.6 1,601,883 + LRK54_RS07425 0.69 +0.0 1,601,883 + LRK54_RS07425 0.69 -0.7 1,601,883 + LRK54_RS07425 0.69 -1.1 1,601,883 + LRK54_RS07425 0.69 -0.8 1,601,884 - LRK54_RS07425 0.69 +0.0 1,601,884 - LRK54_RS07425 0.69 +1.0 1,601,884 - LRK54_RS07425 0.69 -1.8 1,601,884 - LRK54_RS07425 0.69 -1.2 1,601,884 - LRK54_RS07425 0.69 -1.1 1,601,884 - LRK54_RS07425 0.69 +0.1 1,601,884 - LRK54_RS07425 0.69 -0.6 1,601,979 + LRK54_RS07425 0.77 -0.2 1,601,980 - LRK54_RS07425 0.77 +0.0 1,602,030 + LRK54_RS07425 0.81 -1.3 1,602,031 - LRK54_RS07425 0.81 -0.5 1,602,031 - LRK54_RS07425 0.81 -0.7 1,602,031 - LRK54_RS07425 0.81 +1.0 1,602,037 - LRK54_RS07425 0.82 -0.7 1,602,037 - LRK54_RS07425 0.82 -0.8 1,602,068 + LRK54_RS07425 0.85 -1.4 1,602,068 + LRK54_RS07425 0.85 +1.2 1,602,207 + -0.6 1,602,207 + +0.7 1,602,224 - -0.8 1,602,226 - -0.0 1,602,337 - -1.4 1,602,543 - LRK54_RS07430 0.61 -0.4 1,602,543 - LRK54_RS07430 0.61 -1.1 1,602,609 - LRK54_RS07430 0.78 -0.7 1,602,609 - LRK54_RS07430 0.78 -0.7 1,602,609 - LRK54_RS07430 0.78 -2.2 1,602,646 - LRK54_RS07430 0.88 -2.3 1,602,646 - LRK54_RS07430 0.88 -1.3 1,602,731 + -0.4 1,602,731 + -1.8 1,602,732 - -0.8 1,602,732 - +0.7 1,603,056 - LRK54_RS07435 0.46 -1.6 1,603,076 + LRK54_RS07435 0.49 +0.9 1,603,076 + LRK54_RS07435 0.49 -0.5 1,603,077 - LRK54_RS07435 0.49 +0.9 1,603,077 - LRK54_RS07435 0.49 +0.1 1,603,241 + LRK54_RS07435 0.71 -0.9 1,603,241 + LRK54_RS07435 0.71 -1.1 1,603,241 + LRK54_RS07435 0.71 +0.2
Or see this region's nucleotide sequence