Experiment: CDM1 without Pantothenate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10615 and BBR_RS10620 overlap by 4 nucleotides BBR_RS10620 and BBR_RS10625 are separated by 4 nucleotides BBR_RS10625 and BBR_RS10630 are separated by 30 nucleotides
BBR_RS10615: BBR_RS10615 - FtsW/RodA/SpoVE family cell cycle protein, at 99,519 to 101,126
_RS10615
BBR_RS10620: BBR_RS10620 - phosphoprotein phosphatase, at 101,123 to 102,742
_RS10620
BBR_RS10625: BBR_RS10625 - FHA domain-containing protein, at 102,747 to 103,271
_RS10625
BBR_RS10630: BBR_RS10630 - DUF2662 domain-containing protein, at 103,302 to 104,003
_RS10630
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 101.178 kb on + strand at 101.238 kb on - strand at 101.245 kb on - strand at 101.325 kb on - strand, within BBR_RS10620 at 101.325 kb on - strand, within BBR_RS10620 at 101.325 kb on - strand, within BBR_RS10620 at 101.325 kb on - strand, within BBR_RS10620 at 101.412 kb on - strand, within BBR_RS10620 at 101.424 kb on - strand, within BBR_RS10620 at 101.424 kb on - strand, within BBR_RS10620 at 101.439 kb on - strand, within BBR_RS10620 at 101.489 kb on - strand, within BBR_RS10620 at 101.490 kb on - strand, within BBR_RS10620 at 101.491 kb on - strand, within BBR_RS10620 at 101.523 kb on + strand, within BBR_RS10620 at 101.536 kb on - strand, within BBR_RS10620 at 102.763 kb on - strand at 102.808 kb on - strand, within BBR_RS10625 at 102.808 kb on - strand, within BBR_RS10625 at 102.810 kb on - strand, within BBR_RS10625 at 102.860 kb on - strand, within BBR_RS10625 at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.312 kb on - strand at 103.332 kb on - strand at 103.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Pantothenate remove 101,178 + -3.8 101,238 - -1.4 101,245 - -2.1 101,325 - BBR_RS10620 0.12 -2.7 101,325 - BBR_RS10620 0.12 -2.9 101,325 - BBR_RS10620 0.12 -0.9 101,325 - BBR_RS10620 0.12 -2.9 101,412 - BBR_RS10620 0.18 -3.4 101,424 - BBR_RS10620 0.19 -3.6 101,424 - BBR_RS10620 0.19 -2.7 101,439 - BBR_RS10620 0.20 -2.7 101,489 - BBR_RS10620 0.23 -1.5 101,490 - BBR_RS10620 0.23 -2.7 101,491 - BBR_RS10620 0.23 -0.5 101,523 + BBR_RS10620 0.25 +0.2 101,536 - BBR_RS10620 0.25 -2.5 102,763 - -3.2 102,808 - BBR_RS10625 0.12 -3.3 102,808 - BBR_RS10625 0.12 -2.7 102,810 - BBR_RS10625 0.12 -3.9 102,860 - BBR_RS10625 0.22 -0.1 103,275 - -0.2 103,275 - +0.7 103,275 - +0.6 103,275 - +1.0 103,275 - -0.7 103,275 - +1.0 103,275 - +0.2 103,307 - +0.1 103,307 - +0.7 103,307 - -0.3 103,312 - -0.9 103,332 - -0.2 103,337 - -0.4
Or see this region's nucleotide sequence