Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10740

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10730 and AZOBR_RS10735 are separated by 41 nucleotidesAZOBR_RS10735 and AZOBR_RS10740 are separated by 9 nucleotidesAZOBR_RS10740 and AZOBR_RS10745 are separated by 218 nucleotidesAZOBR_RS10745 and AZOBR_RS10750 are separated by 57 nucleotides AZOBR_RS10730: AZOBR_RS10730 - chorismate synthase, at 2,254,701 to 2,255,777 _RS10730 AZOBR_RS10735: AZOBR_RS10735 - hypothetical protein, at 2,255,819 to 2,256,352 _RS10735 AZOBR_RS10740: AZOBR_RS10740 - regulator, at 2,256,362 to 2,257,456 _RS10740 AZOBR_RS10745: AZOBR_RS10745 - alkylhydroperoxidase, at 2,257,675 to 2,258,247 _RS10745 AZOBR_RS10750: AZOBR_RS10750 - protease IV, at 2,258,305 to 2,260,056 _RS10750 Position (kb) 2256 2257 2258Strain fitness (log2 ratio) -1 0 1 2at 2255.927 kb on + strand, within AZOBR_RS10735at 2255.928 kb on - strand, within AZOBR_RS10735at 2256.339 kb on + strandat 2256.340 kb on - strandat 2256.561 kb on + strand, within AZOBR_RS10740at 2256.562 kb on - strand, within AZOBR_RS10740at 2256.990 kb on + strand, within AZOBR_RS10740at 2257.008 kb on + strand, within AZOBR_RS10740at 2257.116 kb on + strand, within AZOBR_RS10740at 2257.117 kb on - strand, within AZOBR_RS10740at 2257.843 kb on + strand, within AZOBR_RS10745at 2257.844 kb on - strand, within AZOBR_RS10745at 2257.930 kb on + strand, within AZOBR_RS10745at 2257.930 kb on + strand, within AZOBR_RS10745at 2257.930 kb on + strand, within AZOBR_RS10745at 2257.930 kb on + strand, within AZOBR_RS10745at 2257.931 kb on - strand, within AZOBR_RS10745at 2257.931 kb on - strand, within AZOBR_RS10745at 2257.931 kb on - strand, within AZOBR_RS10745at 2257.934 kb on - strand, within AZOBR_RS10745at 2258.173 kb on + strand, within AZOBR_RS10745at 2258.173 kb on + strand, within AZOBR_RS10745at 2258.173 kb on + strand, within AZOBR_RS10745at 2258.174 kb on - strand, within AZOBR_RS10745at 2258.174 kb on - strand, within AZOBR_RS10745at 2258.174 kb on - strand, within AZOBR_RS10745at 2258.227 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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2,255,927 + AZOBR_RS10735 0.20 +0.7
2,255,928 - AZOBR_RS10735 0.20 +2.7
2,256,339 + -0.6
2,256,340 - +0.1
2,256,561 + AZOBR_RS10740 0.18 +0.3
2,256,562 - AZOBR_RS10740 0.18 +0.7
2,256,990 + AZOBR_RS10740 0.57 +0.6
2,257,008 + AZOBR_RS10740 0.59 +0.4
2,257,116 + AZOBR_RS10740 0.69 +0.4
2,257,117 - AZOBR_RS10740 0.69 -0.5
2,257,843 + AZOBR_RS10745 0.29 -0.7
2,257,844 - AZOBR_RS10745 0.29 -0.5
2,257,930 + AZOBR_RS10745 0.45 -0.3
2,257,930 + AZOBR_RS10745 0.45 +0.1
2,257,930 + AZOBR_RS10745 0.45 +0.7
2,257,930 + AZOBR_RS10745 0.45 +0.2
2,257,931 - AZOBR_RS10745 0.45 +1.2
2,257,931 - AZOBR_RS10745 0.45 -0.1
2,257,931 - AZOBR_RS10745 0.45 +1.0
2,257,934 - AZOBR_RS10745 0.45 -0.3
2,258,173 + AZOBR_RS10745 0.87 +0.6
2,258,173 + AZOBR_RS10745 0.87 -0.2
2,258,173 + AZOBR_RS10745 0.87 +0.1
2,258,174 - AZOBR_RS10745 0.87 -0.2
2,258,174 - AZOBR_RS10745 0.87 -0.1
2,258,174 - AZOBR_RS10745 0.87 -0.6
2,258,227 + -0.2

Or see this region's nucleotide sequence