Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4124

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4123 and Shewana3_4124 are separated by 167 nucleotidesShewana3_4124 and Shewana3_4125 are separated by 79 nucleotides Shewana3_4123: Shewana3_4123 - naphthoate synthase (RefSeq), at 4,955,202 to 4,956,104 _4123 Shewana3_4124: Shewana3_4124 - hypothetical protein (RefSeq), at 4,956,272 to 4,956,475 _4124 Shewana3_4125: Shewana3_4125 - glucosamine--fructose-6-phosphate aminotransferase (RefSeq), at 4,956,555 to 4,958,384 _4125 Position (kb) 4956 4957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4955.303 kb on - strand, within Shewana3_4123at 4955.359 kb on - strand, within Shewana3_4123at 4955.414 kb on - strand, within Shewana3_4123at 4955.431 kb on - strand, within Shewana3_4123at 4955.624 kb on + strand, within Shewana3_4123at 4955.739 kb on + strand, within Shewana3_4123at 4955.739 kb on + strand, within Shewana3_4123at 4955.747 kb on - strand, within Shewana3_4123at 4955.747 kb on - strand, within Shewana3_4123at 4955.749 kb on + strand, within Shewana3_4123at 4955.806 kb on + strand, within Shewana3_4123at 4955.814 kb on - strand, within Shewana3_4123at 4955.814 kb on - strand, within Shewana3_4123at 4955.886 kb on + strand, within Shewana3_4123at 4955.950 kb on + strand, within Shewana3_4123at 4956.015 kb on + strandat 4956.015 kb on + strandat 4956.023 kb on - strandat 4956.032 kb on + strandat 4956.036 kb on + strandat 4956.135 kb on - strandat 4956.362 kb on + strand, within Shewana3_4124at 4956.470 kb on + strandat 4956.499 kb on - strandat 4956.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,955,303 - Shewana3_4123 0.11 +0.6
4,955,359 - Shewana3_4123 0.17 +0.4
4,955,414 - Shewana3_4123 0.23 -0.9
4,955,431 - Shewana3_4123 0.25 +0.1
4,955,624 + Shewana3_4123 0.47 +0.6
4,955,739 + Shewana3_4123 0.59 +0.1
4,955,739 + Shewana3_4123 0.59 -2.8
4,955,747 - Shewana3_4123 0.60 -0.3
4,955,747 - Shewana3_4123 0.60 +0.3
4,955,749 + Shewana3_4123 0.61 -0.9
4,955,806 + Shewana3_4123 0.67 -1.1
4,955,814 - Shewana3_4123 0.68 -0.7
4,955,814 - Shewana3_4123 0.68 +2.0
4,955,886 + Shewana3_4123 0.76 -0.8
4,955,950 + Shewana3_4123 0.83 +0.4
4,956,015 + -0.7
4,956,015 + +0.6
4,956,023 - -0.4
4,956,032 + +0.7
4,956,036 + +0.2
4,956,135 - -0.9
4,956,362 + Shewana3_4124 0.44 -1.4
4,956,470 + -1.4
4,956,499 - -0.5
4,956,506 - +0.8

Or see this region's nucleotide sequence