Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3903

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3902 and Shewana3_3903 are separated by 60 nucleotidesShewana3_3903 and Shewana3_3904 are separated by 12 nucleotidesShewana3_3904 and argC are separated by 31 nucleotides Shewana3_3902: Shewana3_3902 - argininosuccinate synthase (RefSeq), at 4,682,547 to 4,683,770 _3902 Shewana3_3903: Shewana3_3903 - ornithine carbamoyltransferase (RefSeq), at 4,683,831 to 4,684,736 _3903 Shewana3_3904: Shewana3_3904 - acetylglutamate kinase (RefSeq), at 4,684,749 to 4,685,531 _3904 Shewana3_3905: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 4,685,563 to 4,686,543 argC Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4682.990 kb on + strand, within Shewana3_3902at 4683.066 kb on + strand, within Shewana3_3902at 4683.079 kb on - strand, within Shewana3_3902at 4683.143 kb on - strand, within Shewana3_3902at 4683.273 kb on - strand, within Shewana3_3902at 4683.394 kb on + strand, within Shewana3_3902at 4683.404 kb on + strand, within Shewana3_3902at 4683.534 kb on - strand, within Shewana3_3902at 4683.624 kb on + strand, within Shewana3_3902at 4683.846 kb on + strandat 4683.969 kb on - strand, within Shewana3_3903at 4684.124 kb on + strand, within Shewana3_3903at 4684.180 kb on - strand, within Shewana3_3903at 4684.209 kb on - strand, within Shewana3_3903at 4684.427 kb on - strand, within Shewana3_3903at 4684.624 kb on - strand, within Shewana3_3903at 4684.631 kb on + strand, within Shewana3_3903at 4684.802 kb on + strandat 4684.846 kb on - strand, within Shewana3_3904

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,682,990 + Shewana3_3902 0.36 -2.1
4,683,066 + Shewana3_3902 0.42 -1.7
4,683,079 - Shewana3_3902 0.43 -3.4
4,683,143 - Shewana3_3902 0.49 -4.8
4,683,273 - Shewana3_3902 0.59 -2.7
4,683,394 + Shewana3_3902 0.69 -2.9
4,683,404 + Shewana3_3902 0.70 -3.7
4,683,534 - Shewana3_3902 0.81 -1.5
4,683,624 + Shewana3_3902 0.88 -3.8
4,683,846 + -1.7
4,683,969 - Shewana3_3903 0.15 -0.7
4,684,124 + Shewana3_3903 0.32 -4.4
4,684,180 - Shewana3_3903 0.39 -2.9
4,684,209 - Shewana3_3903 0.42 -3.0
4,684,427 - Shewana3_3903 0.66 -1.8
4,684,624 - Shewana3_3903 0.88 -3.3
4,684,631 + Shewana3_3903 0.88 -1.5
4,684,802 + -2.5
4,684,846 - Shewana3_3904 0.12 -3.5

Or see this region's nucleotide sequence