Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3615

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3614 and Shewana3_3615 are separated by 204 nucleotidesShewana3_3615 and Shewana3_3616 are separated by 107 nucleotidesShewana3_3616 and Shewana3_3617 are separated by 122 nucleotides Shewana3_3614: Shewana3_3614 - cystathionine gamma-synthase (RefSeq), at 4,340,806 to 4,341,987 _3614 Shewana3_3615: Shewana3_3615 - transcriptional repressor protein MetJ (RefSeq), at 4,342,192 to 4,342,506 _3615 Shewana3_3616: Shewana3_3616 - hypothetical protein (RefSeq), at 4,342,614 to 4,343,357 _3616 Shewana3_3617: Shewana3_3617 - polysulphide reductase, NrfD (RefSeq), at 4,343,480 to 4,344,424 _3617 Position (kb) 4342 4343Strain fitness (log2 ratio) -3 -2 -1 0 1at 4341.199 kb on + strand, within Shewana3_3614at 4341.222 kb on + strand, within Shewana3_3614at 4341.254 kb on - strand, within Shewana3_3614at 4341.279 kb on + strand, within Shewana3_3614at 4341.287 kb on - strand, within Shewana3_3614at 4341.326 kb on - strand, within Shewana3_3614at 4341.346 kb on + strand, within Shewana3_3614at 4341.351 kb on + strand, within Shewana3_3614at 4341.434 kb on + strand, within Shewana3_3614at 4341.441 kb on + strand, within Shewana3_3614at 4341.532 kb on - strand, within Shewana3_3614at 4341.542 kb on + strand, within Shewana3_3614at 4341.572 kb on - strand, within Shewana3_3614at 4341.579 kb on - strand, within Shewana3_3614at 4341.756 kb on + strand, within Shewana3_3614at 4341.787 kb on + strand, within Shewana3_3614at 4341.910 kb on - strandat 4341.939 kb on + strandat 4341.994 kb on + strandat 4342.141 kb on + strandat 4342.234 kb on - strand, within Shewana3_3615at 4342.334 kb on + strand, within Shewana3_3615at 4342.470 kb on - strand, within Shewana3_3615at 4342.509 kb on - strandat 4342.672 kb on - strandat 4342.696 kb on + strand, within Shewana3_3616at 4342.704 kb on - strand, within Shewana3_3616at 4342.704 kb on - strand, within Shewana3_3616at 4342.727 kb on + strand, within Shewana3_3616at 4342.730 kb on + strand, within Shewana3_3616at 4342.858 kb on - strand, within Shewana3_3616at 4343.109 kb on + strand, within Shewana3_3616at 4343.230 kb on + strand, within Shewana3_3616at 4343.230 kb on + strand, within Shewana3_3616at 4343.287 kb on + strandat 4343.287 kb on + strandat 4343.287 kb on + strandat 4343.287 kb on + strandat 4343.295 kb on - strandat 4343.295 kb on - strandat 4343.295 kb on - strandat 4343.311 kb on + strandat 4343.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,341,199 + Shewana3_3614 0.33 -1.8
4,341,222 + Shewana3_3614 0.35 -0.6
4,341,254 - Shewana3_3614 0.38 -2.2
4,341,279 + Shewana3_3614 0.40 -3.2
4,341,287 - Shewana3_3614 0.41 -2.9
4,341,326 - Shewana3_3614 0.44 -1.9
4,341,346 + Shewana3_3614 0.46 -2.1
4,341,351 + Shewana3_3614 0.46 -1.9
4,341,434 + Shewana3_3614 0.53 -2.5
4,341,441 + Shewana3_3614 0.54 -2.1
4,341,532 - Shewana3_3614 0.61 -1.7
4,341,542 + Shewana3_3614 0.62 -0.5
4,341,572 - Shewana3_3614 0.65 -0.0
4,341,579 - Shewana3_3614 0.65 -1.6
4,341,756 + Shewana3_3614 0.80 -1.0
4,341,787 + Shewana3_3614 0.83 -0.5
4,341,910 - -3.2
4,341,939 + -2.7
4,341,994 + -2.3
4,342,141 + -0.4
4,342,234 - Shewana3_3615 0.13 -2.5
4,342,334 + Shewana3_3615 0.45 -0.6
4,342,470 - Shewana3_3615 0.88 -1.9
4,342,509 - +1.0
4,342,672 - -0.5
4,342,696 + Shewana3_3616 0.11 -0.8
4,342,704 - Shewana3_3616 0.12 -1.7
4,342,704 - Shewana3_3616 0.12 +0.3
4,342,727 + Shewana3_3616 0.15 -0.1
4,342,730 + Shewana3_3616 0.16 -0.6
4,342,858 - Shewana3_3616 0.33 +0.4
4,343,109 + Shewana3_3616 0.67 +0.6
4,343,230 + Shewana3_3616 0.83 +0.4
4,343,230 + Shewana3_3616 0.83 -0.4
4,343,287 + +0.3
4,343,287 + +0.2
4,343,287 + +0.6
4,343,287 + +0.4
4,343,295 - -1.3
4,343,295 - -0.7
4,343,295 - +0.7
4,343,311 + -0.6
4,343,492 + -0.0

Or see this region's nucleotide sequence