Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3602

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3601 and Shewana3_3602 are separated by 318 nucleotidesShewana3_3602 and Shewana3_3603 are separated by 158 nucleotides Shewana3_3601: Shewana3_3601 - hypothetical protein (RefSeq), at 4,324,331 to 4,325,320 _3601 Shewana3_3602: Shewana3_3602 - hydratase/decarboxylase family protein (RefSeq), at 4,325,639 to 4,326,454 _3602 Shewana3_3603: Shewana3_3603 - TonB family protein (RefSeq), at 4,326,613 to 4,327,728 _3603 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -3 -2 -1 0 1at 4324.748 kb on + strand, within Shewana3_3601at 4324.782 kb on + strand, within Shewana3_3601at 4324.816 kb on + strand, within Shewana3_3601at 4324.821 kb on + strand, within Shewana3_3601at 4324.883 kb on + strand, within Shewana3_3601at 4324.913 kb on - strand, within Shewana3_3601at 4325.068 kb on + strand, within Shewana3_3601at 4325.273 kb on + strandat 4325.490 kb on + strandat 4325.603 kb on + strandat 4325.611 kb on - strandat 4325.940 kb on + strand, within Shewana3_3602at 4326.168 kb on - strand, within Shewana3_3602at 4326.168 kb on - strand, within Shewana3_3602at 4326.371 kb on + strand, within Shewana3_3602at 4326.404 kb on + strandat 4326.412 kb on - strandat 4326.460 kb on + strandat 4326.497 kb on - strandat 4326.708 kb on + strandat 4327.141 kb on - strand, within Shewana3_3603at 4327.150 kb on + strand, within Shewana3_3603at 4327.164 kb on - strand, within Shewana3_3603at 4327.213 kb on + strand, within Shewana3_3603at 4327.218 kb on + strand, within Shewana3_3603at 4327.221 kb on - strand, within Shewana3_3603at 4327.223 kb on + strand, within Shewana3_3603

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
4,324,748 + Shewana3_3601 0.42 +0.4
4,324,782 + Shewana3_3601 0.46 -0.5
4,324,816 + Shewana3_3601 0.49 +1.2
4,324,821 + Shewana3_3601 0.49 +1.3
4,324,883 + Shewana3_3601 0.56 +0.4
4,324,913 - Shewana3_3601 0.59 +1.1
4,325,068 + Shewana3_3601 0.74 +0.5
4,325,273 + +0.2
4,325,490 + -3.1
4,325,603 + -0.9
4,325,611 - +0.6
4,325,940 + Shewana3_3602 0.37 +0.0
4,326,168 - Shewana3_3602 0.65 +0.1
4,326,168 - Shewana3_3602 0.65 -1.1
4,326,371 + Shewana3_3602 0.90 -0.5
4,326,404 + +0.4
4,326,412 - -0.8
4,326,460 + +0.4
4,326,497 - -0.2
4,326,708 + +0.8
4,327,141 - Shewana3_3603 0.47 +0.8
4,327,150 + Shewana3_3603 0.48 -1.2
4,327,164 - Shewana3_3603 0.49 -0.7
4,327,213 + Shewana3_3603 0.54 +0.1
4,327,218 + Shewana3_3603 0.54 +0.2
4,327,221 - Shewana3_3603 0.54 +0.6
4,327,223 + Shewana3_3603 0.55 +0.6

Or see this region's nucleotide sequence