Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3352

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgk and Shewana3_3352 are separated by 132 nucleotidesShewana3_3352 and Shewana3_3353 are separated by 128 nucleotides Shewana3_3351: pgk - phosphoglycerate kinase (RefSeq), at 4,020,170 to 4,021,345 pgk Shewana3_3352: Shewana3_3352 - erythrose 4-phosphate dehydrogenase (RefSeq), at 4,021,478 to 4,022,494 _3352 Shewana3_3353: Shewana3_3353 - transketolase (RefSeq), at 4,022,623 to 4,024,617 _3353 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -3 -2 -1 0 1at 4021.489 kb on - strandat 4021.614 kb on - strand, within Shewana3_3352at 4021.654 kb on + strand, within Shewana3_3352at 4021.665 kb on - strand, within Shewana3_3352at 4021.667 kb on + strand, within Shewana3_3352at 4021.675 kb on - strand, within Shewana3_3352at 4021.812 kb on - strand, within Shewana3_3352at 4021.855 kb on + strand, within Shewana3_3352at 4021.888 kb on + strand, within Shewana3_3352at 4022.096 kb on - strand, within Shewana3_3352at 4022.126 kb on - strand, within Shewana3_3352at 4022.133 kb on + strand, within Shewana3_3352at 4022.140 kb on - strand, within Shewana3_3352at 4022.159 kb on + strand, within Shewana3_3352at 4022.167 kb on - strand, within Shewana3_3352at 4022.341 kb on - strand, within Shewana3_3352at 4022.351 kb on - strand, within Shewana3_3352at 4022.367 kb on - strand, within Shewana3_3352at 4022.465 kb on + strandat 4022.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,021,489 - -1.5
4,021,614 - Shewana3_3352 0.13 -2.3
4,021,654 + Shewana3_3352 0.17 +0.0
4,021,665 - Shewana3_3352 0.18 -2.9
4,021,667 + Shewana3_3352 0.19 -1.6
4,021,675 - Shewana3_3352 0.19 -2.7
4,021,812 - Shewana3_3352 0.33 -1.7
4,021,855 + Shewana3_3352 0.37 -1.3
4,021,888 + Shewana3_3352 0.40 +0.2
4,022,096 - Shewana3_3352 0.61 -1.3
4,022,126 - Shewana3_3352 0.64 -1.4
4,022,133 + Shewana3_3352 0.64 -2.0
4,022,140 - Shewana3_3352 0.65 -2.2
4,022,159 + Shewana3_3352 0.67 +1.1
4,022,167 - Shewana3_3352 0.68 -1.3
4,022,341 - Shewana3_3352 0.85 -0.7
4,022,351 - Shewana3_3352 0.86 -1.5
4,022,367 - Shewana3_3352 0.87 -1.1
4,022,465 + -0.5
4,022,568 - +0.1

Or see this region's nucleotide sequence