Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3345 and Shewana3_3346 are separated by 67 nucleotides Shewana3_3346 and Shewana3_3347 overlap by 8 nucleotides Shewana3_3347 and Shewana3_3348 are separated by 166 nucleotides
Shewana3_3345: Shewana3_3345 - hypothetical protein (RefSeq), at 4,014,269 to 4,014,793
_3345
Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409
_3346
Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151
_3347
Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787
_3348
Position (kb)
4015
4016
4017 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4014.415 kb on - strand, within Shewana3_3345 at 4014.566 kb on - strand, within Shewana3_3345 at 4014.920 kb on + strand, within Shewana3_3346 at 4015.132 kb on + strand, within Shewana3_3346 at 4015.151 kb on + strand, within Shewana3_3346 at 4015.327 kb on - strand, within Shewana3_3346 at 4015.589 kb on + strand, within Shewana3_3347 at 4015.601 kb on + strand, within Shewana3_3347 at 4015.756 kb on - strand, within Shewana3_3347 at 4015.999 kb on + strand, within Shewana3_3347 at 4016.007 kb on - strand, within Shewana3_3347 at 4016.426 kb on + strand at 4016.534 kb on + strand, within Shewana3_3348 at 4016.670 kb on - strand, within Shewana3_3348 at 4016.685 kb on + strand, within Shewana3_3348 at 4016.716 kb on - strand, within Shewana3_3348 at 4016.749 kb on + strand, within Shewana3_3348 at 4016.844 kb on + strand, within Shewana3_3348
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 4,014,415 - Shewana3_3345 0.28 -3.3 4,014,566 - Shewana3_3345 0.57 -1.1 4,014,920 + Shewana3_3346 0.11 +0.4 4,015,132 + Shewana3_3346 0.49 -0.2 4,015,151 + Shewana3_3346 0.53 -0.5 4,015,327 - Shewana3_3346 0.85 +0.5 4,015,589 + Shewana3_3347 0.25 -0.4 4,015,601 + Shewana3_3347 0.27 +0.3 4,015,756 - Shewana3_3347 0.47 -0.3 4,015,999 + Shewana3_3347 0.80 +0.4 4,016,007 - Shewana3_3347 0.81 +0.7 4,016,426 + +0.2 4,016,534 + Shewana3_3348 0.15 +1.2 4,016,670 - Shewana3_3348 0.24 +0.2 4,016,685 + Shewana3_3348 0.25 -0.5 4,016,716 - Shewana3_3348 0.27 -0.1 4,016,749 + Shewana3_3348 0.29 -1.0 4,016,844 + Shewana3_3348 0.36 +0.2
Or see this region's nucleotide sequence