Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2731 and Shewana3_2732 are separated by 127 nucleotides Shewana3_2732 and Shewana3_2733 are separated by 33 nucleotides Shewana3_2733 and Shewana3_2734 are separated by 59 nucleotides
Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861
_2731
Shewana3_2732: Shewana3_2732 - phosphate ABC transporter, ATPase subunit (RefSeq), at 3,261,989 to 3,262,807
_2732
Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499
_2733
Shewana3_2734: Shewana3_2734 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,264,559 to 3,266,817
_2734
Position (kb)
3262
3263
3264
3265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3261.878 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3262.169 kb on - strand, within Shewana3_2732 at 3262.599 kb on - strand at 3263.093 kb on - strand, within Shewana3_2733 at 3263.223 kb on - strand, within Shewana3_2733 at 3263.260 kb on - strand, within Shewana3_2733 at 3263.314 kb on - strand, within Shewana3_2733 at 3263.314 kb on - strand, within Shewana3_2733 at 3263.314 kb on - strand, within Shewana3_2733 at 3263.425 kb on - strand, within Shewana3_2733 at 3263.689 kb on - strand, within Shewana3_2733 at 3264.201 kb on - strand, within Shewana3_2733 at 3264.576 kb on - strand at 3264.668 kb on - strand at 3264.743 kb on - strand at 3264.772 kb on - strand at 3265.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,261,878 - +0.2 3,261,930 - -1.3 3,261,930 - +0.5 3,261,930 - -0.3 3,262,169 - Shewana3_2732 0.22 +1.2 3,262,599 - +2.4 3,263,093 - Shewana3_2733 0.15 -0.7 3,263,223 - Shewana3_2733 0.23 -1.1 3,263,260 - Shewana3_2733 0.25 -0.2 3,263,314 - Shewana3_2733 0.29 +0.4 3,263,314 - Shewana3_2733 0.29 -0.9 3,263,314 - Shewana3_2733 0.29 -1.4 3,263,425 - Shewana3_2733 0.35 +0.1 3,263,689 - Shewana3_2733 0.51 -0.6 3,264,201 - Shewana3_2733 0.82 +1.4 3,264,576 - -0.4 3,264,668 - +1.3 3,264,743 - -2.0 3,264,772 - +0.5 3,265,256 - +0.8
Or see this region's nucleotide sequence