Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2693 and Shewana3_2694 are separated by 66 nucleotides Shewana3_2694 and Shewana3_2695 overlap by 4 nucleotides Shewana3_2695 and Shewana3_2696 overlap by 11 nucleotides
Shewana3_2693: Shewana3_2693 - AraC family transcriptional regulator (RefSeq), at 3,219,746 to 3,220,582
_2693
Shewana3_2694: Shewana3_2694 - AzlC family protein (RefSeq), at 3,220,649 to 3,221,416
_2694
Shewana3_2695: Shewana3_2695 - branched-chain amino acid transport (RefSeq), at 3,221,413 to 3,221,715
_2695
Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063
_2696
Position (kb)
3221
3222 Strain fitness (log2 ratio)
-2
-1
0
1 at 3220.446 kb on + strand, within Shewana3_2693 at 3220.600 kb on + strand at 3220.662 kb on + strand at 3220.747 kb on + strand, within Shewana3_2694 at 3220.936 kb on + strand, within Shewana3_2694 at 3221.044 kb on + strand, within Shewana3_2694 at 3221.078 kb on + strand, within Shewana3_2694 at 3221.079 kb on - strand, within Shewana3_2694 at 3221.106 kb on + strand, within Shewana3_2694 at 3221.106 kb on + strand, within Shewana3_2694 at 3221.284 kb on - strand, within Shewana3_2694 at 3221.340 kb on + strand at 3221.355 kb on - strand at 3221.367 kb on - strand at 3221.680 kb on + strand, within Shewana3_2695 at 3221.734 kb on - strand at 3221.743 kb on - strand at 3221.855 kb on - strand, within Shewana3_2696 at 3221.918 kb on - strand, within Shewana3_2696 at 3221.929 kb on + strand, within Shewana3_2696 at 3221.937 kb on - strand, within Shewana3_2696 at 3221.942 kb on + strand, within Shewana3_2696 at 3222.127 kb on - strand, within Shewana3_2696 at 3222.171 kb on + strand, within Shewana3_2696 at 3222.198 kb on - strand, within Shewana3_2696 at 3222.250 kb on + strand, within Shewana3_2696 at 3222.282 kb on - strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.697 kb on - strand, within Shewana3_2696
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,220,446 + Shewana3_2693 0.84 +0.3 3,220,600 + -0.0 3,220,662 + +1.0 3,220,747 + Shewana3_2694 0.13 +0.5 3,220,936 + Shewana3_2694 0.37 +0.9 3,221,044 + Shewana3_2694 0.51 -1.0 3,221,078 + Shewana3_2694 0.56 +0.5 3,221,079 - Shewana3_2694 0.56 -0.8 3,221,106 + Shewana3_2694 0.60 +0.6 3,221,106 + Shewana3_2694 0.60 -0.6 3,221,284 - Shewana3_2694 0.83 +0.7 3,221,340 + -0.8 3,221,355 - -1.2 3,221,367 - +0.1 3,221,680 + Shewana3_2695 0.88 +0.9 3,221,734 - +0.7 3,221,743 - -0.9 3,221,855 - Shewana3_2696 0.11 +0.6 3,221,918 - Shewana3_2696 0.16 +0.1 3,221,929 + Shewana3_2696 0.16 -2.0 3,221,937 - Shewana3_2696 0.17 -0.8 3,221,942 + Shewana3_2696 0.17 +1.1 3,222,127 - Shewana3_2696 0.31 -0.5 3,222,171 + Shewana3_2696 0.34 -1.5 3,222,198 - Shewana3_2696 0.36 -0.5 3,222,250 + Shewana3_2696 0.40 -1.7 3,222,282 - Shewana3_2696 0.42 -0.7 3,222,660 + Shewana3_2696 0.70 -0.3 3,222,660 + Shewana3_2696 0.70 -0.8 3,222,697 - Shewana3_2696 0.73 +0.2
Or see this region's nucleotide sequence