Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2449 and Shewana3_2450 overlap by 1 nucleotides Shewana3_2450 and Shewana3_2451 are separated by 144 nucleotides Shewana3_2451 and Shewana3_2452 are separated by 259 nucleotides
Shewana3_2449: Shewana3_2449 - hypothetical protein (RefSeq), at 2,937,793 to 2,938,533
_2449
Shewana3_2450: Shewana3_2450 - hypothetical protein (RefSeq), at 2,938,533 to 2,939,372
_2450
Shewana3_2451: Shewana3_2451 - hypothetical protein (RefSeq), at 2,939,517 to 2,939,948
_2451
Shewana3_2452: Shewana3_2452 - dihydrouridine synthase, DuS (RefSeq), at 2,940,208 to 2,941,155
_2452
Position (kb)
2939
2940 Strain fitness (log2 ratio)
-2
-1
0
1 at 2938.644 kb on - strand, within Shewana3_2450 at 2938.677 kb on - strand, within Shewana3_2450 at 2938.677 kb on - strand, within Shewana3_2450 at 2938.799 kb on + strand, within Shewana3_2450 at 2939.162 kb on + strand, within Shewana3_2450 at 2939.191 kb on - strand, within Shewana3_2450 at 2939.345 kb on - strand at 2939.374 kb on + strand at 2939.491 kb on - strand at 2939.589 kb on + strand, within Shewana3_2451 at 2939.731 kb on + strand, within Shewana3_2451 at 2939.811 kb on - strand, within Shewana3_2451 at 2939.900 kb on + strand, within Shewana3_2451 at 2940.044 kb on + strand at 2940.364 kb on - strand, within Shewana3_2452 at 2940.385 kb on - strand, within Shewana3_2452 at 2940.538 kb on + strand, within Shewana3_2452 at 2940.538 kb on + strand, within Shewana3_2452 at 2940.560 kb on - strand, within Shewana3_2452 at 2940.609 kb on + strand, within Shewana3_2452 at 2940.769 kb on - strand, within Shewana3_2452
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,938,644 - Shewana3_2450 0.13 +0.4 2,938,677 - Shewana3_2450 0.17 +0.4 2,938,677 - Shewana3_2450 0.17 -0.7 2,938,799 + Shewana3_2450 0.32 +0.3 2,939,162 + Shewana3_2450 0.75 -0.7 2,939,191 - Shewana3_2450 0.78 +0.3 2,939,345 - -0.0 2,939,374 + +0.0 2,939,491 - -0.3 2,939,589 + Shewana3_2451 0.17 -2.3 2,939,731 + Shewana3_2451 0.50 -2.5 2,939,811 - Shewana3_2451 0.68 -0.2 2,939,900 + Shewana3_2451 0.89 -0.5 2,940,044 + +0.2 2,940,364 - Shewana3_2452 0.16 +0.2 2,940,385 - Shewana3_2452 0.19 -0.3 2,940,538 + Shewana3_2452 0.35 +0.3 2,940,538 + Shewana3_2452 0.35 +0.4 2,940,560 - Shewana3_2452 0.37 -0.5 2,940,609 + Shewana3_2452 0.42 +1.5 2,940,769 - Shewana3_2452 0.59 -0.2
Or see this region's nucleotide sequence