Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2096

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2095 and Shewana3_2096 overlap by 8 nucleotidesShewana3_2096 and mukB overlap by 8 nucleotides Shewana3_2095: Shewana3_2095 - hypothetical protein (RefSeq), at 2,515,287 to 2,516,345 _2095 Shewana3_2096: Shewana3_2096 - thioredoxin-disulfide reductase (RefSeq), at 2,516,338 to 2,517,120 _2096 Shewana3_2097: mukB - cell division protein MukB (RefSeq), at 2,517,113 to 2,521,666 mukB Position (kb) 2516 2517 2518Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2515.414 kb on - strand, within Shewana3_2095at 2515.416 kb on - strand, within Shewana3_2095at 2515.584 kb on - strand, within Shewana3_2095at 2515.827 kb on + strand, within Shewana3_2095at 2515.834 kb on + strand, within Shewana3_2095at 2515.999 kb on + strand, within Shewana3_2095at 2516.282 kb on + strandat 2516.370 kb on - strandat 2516.384 kb on + strandat 2516.384 kb on + strandat 2516.532 kb on + strand, within Shewana3_2096at 2516.639 kb on - strand, within Shewana3_2096at 2516.862 kb on + strand, within Shewana3_2096at 2517.274 kb on + strandat 2517.282 kb on + strandat 2517.509 kb on - strandat 2517.527 kb on - strandat 2517.696 kb on + strand, within mukBat 2517.925 kb on + strand, within mukBat 2518.054 kb on - strand, within mukB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,515,414 - Shewana3_2095 0.12 +0.5
2,515,416 - Shewana3_2095 0.12 -0.6
2,515,584 - Shewana3_2095 0.28 -0.1
2,515,827 + Shewana3_2095 0.51 -0.9
2,515,834 + Shewana3_2095 0.52 +2.8
2,515,999 + Shewana3_2095 0.67 +0.2
2,516,282 + -0.0
2,516,370 - +0.2
2,516,384 + +0.7
2,516,384 + +0.0
2,516,532 + Shewana3_2096 0.25 -0.4
2,516,639 - Shewana3_2096 0.38 -1.9
2,516,862 + Shewana3_2096 0.67 -1.1
2,517,274 + +1.4
2,517,282 + -1.3
2,517,509 - -2.3
2,517,527 - -1.5
2,517,696 + mukB Shewana3_2097 0.13 +0.1
2,517,925 + mukB Shewana3_2097 0.18 -1.9
2,518,054 - mukB Shewana3_2097 0.21 -0.1

Or see this region's nucleotide sequence