Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1694 and Shewana3_1695 are separated by 108 nucleotides Shewana3_1695 and Shewana3_1696 are separated by 102 nucleotides Shewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1697 and Shewana3_1698 are separated by 209 nucleotides
Shewana3_1694: Shewana3_1694 - alcohol dehydrogenase (RefSeq), at 1,992,984 to 1,994,030
_1694
Shewana3_1695: Shewana3_1695 - cupin 2 domain-containing protein (RefSeq), at 1,994,139 to 1,994,576
_1695
Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053
_1696
Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674
_1697
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Position (kb)
1994
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.732 kb on + strand, within Shewana3_1694 at 1993.732 kb on + strand, within Shewana3_1694 at 1993.740 kb on - strand, within Shewana3_1694 at 1993.775 kb on + strand, within Shewana3_1694 at 1993.786 kb on + strand, within Shewana3_1694 at 1993.879 kb on + strand, within Shewana3_1694 at 1993.933 kb on - strand at 1993.957 kb on - strand at 1994.108 kb on + strand at 1994.319 kb on - strand, within Shewana3_1695 at 1994.530 kb on - strand, within Shewana3_1695 at 1994.783 kb on + strand, within Shewana3_1696 at 1994.812 kb on + strand, within Shewana3_1696 at 1994.965 kb on - strand, within Shewana3_1696 at 1995.049 kb on - strand at 1995.270 kb on + strand, within Shewana3_1697 at 1995.398 kb on + strand, within Shewana3_1697 at 1995.553 kb on + strand, within Shewana3_1697 at 1995.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,993,732 + Shewana3_1694 0.71 -0.5 1,993,732 + Shewana3_1694 0.71 -0.4 1,993,740 - Shewana3_1694 0.72 -2.3 1,993,775 + Shewana3_1694 0.76 +0.7 1,993,786 + Shewana3_1694 0.77 +0.4 1,993,879 + Shewana3_1694 0.85 +0.3 1,993,933 - -0.4 1,993,957 - -0.5 1,994,108 + +1.0 1,994,319 - Shewana3_1695 0.41 +0.4 1,994,530 - Shewana3_1695 0.89 -0.3 1,994,783 + Shewana3_1696 0.28 -0.8 1,994,812 + Shewana3_1696 0.35 +1.0 1,994,965 - Shewana3_1696 0.76 -0.4 1,995,049 - -0.4 1,995,270 + Shewana3_1697 0.25 -0.5 1,995,398 + Shewana3_1697 0.49 -0.3 1,995,553 + Shewana3_1697 0.77 -0.4 1,995,750 - -1.0
Or see this region's nucleotide sequence