Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1633

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1632 and Shewana3_1633 are separated by 170 nucleotidesShewana3_1633 and nhaB are separated by 95 nucleotides Shewana3_1632: Shewana3_1632 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,919,548 to 1,922,166 _1632 Shewana3_1633: Shewana3_1633 - disulfide bond formation protein B (RefSeq), at 1,922,337 to 1,922,864 _1633 Shewana3_1634: nhaB - sodium/proton antiporter (RefSeq), at 1,922,960 to 1,924,561 nhaB Position (kb) 1922 1923Strain fitness (log2 ratio) -2 -1 0 1at 1921.596 kb on + strand, within Shewana3_1632at 1921.596 kb on + strand, within Shewana3_1632at 1921.919 kb on + strandat 1922.064 kb on + strandat 1922.141 kb on + strandat 1922.300 kb on + strandat 1922.418 kb on - strand, within Shewana3_1633at 1922.495 kb on - strand, within Shewana3_1633at 1922.565 kb on + strand, within Shewana3_1633at 1922.688 kb on + strand, within Shewana3_1633at 1922.757 kb on - strand, within Shewana3_1633at 1922.902 kb on - strandat 1923.037 kb on - strandat 1923.101 kb on + strandat 1923.104 kb on - strandat 1923.104 kb on - strandat 1923.104 kb on - strandat 1923.333 kb on - strand, within nhaBat 1923.344 kb on - strand, within nhaBat 1923.640 kb on - strand, within nhaB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,921,596 + Shewana3_1632 0.78 -0.8
1,921,596 + Shewana3_1632 0.78 -1.6
1,921,919 + -1.6
1,922,064 + -0.1
1,922,141 + +0.1
1,922,300 + -0.6
1,922,418 - Shewana3_1633 0.15 -2.0
1,922,495 - Shewana3_1633 0.30 -0.2
1,922,565 + Shewana3_1633 0.43 -0.2
1,922,688 + Shewana3_1633 0.66 -0.8
1,922,757 - Shewana3_1633 0.80 +0.8
1,922,902 - +0.2
1,923,037 - -0.8
1,923,101 + -0.3
1,923,104 - -1.1
1,923,104 - -1.3
1,923,104 - -0.2
1,923,333 - nhaB Shewana3_1634 0.23 -2.4
1,923,344 - nhaB Shewana3_1634 0.24 +1.4
1,923,640 - nhaB Shewana3_1634 0.42 -0.9

Or see this region's nucleotide sequence