Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1529 and Shewana3_1530 are separated by 112 nucleotides Shewana3_1530 and Shewana3_1531 are separated by 193 nucleotides
Shewana3_1529: Shewana3_1529 - hypothetical protein (RefSeq), at 1,779,065 to 1,781,551
_1529
Shewana3_1530: Shewana3_1530 - putative periplasmic protease (RefSeq), at 1,781,664 to 1,782,680
_1530
Shewana3_1531: Shewana3_1531 - AraC family transcriptional regulator (RefSeq), at 1,782,874 to 1,783,905
_1531
Position (kb)
1781
1782
1783 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1780.681 kb on + strand, within Shewana3_1529 at 1780.754 kb on - strand, within Shewana3_1529 at 1780.758 kb on + strand, within Shewana3_1529 at 1780.821 kb on - strand, within Shewana3_1529 at 1780.823 kb on - strand, within Shewana3_1529 at 1781.052 kb on - strand, within Shewana3_1529 at 1781.052 kb on - strand, within Shewana3_1529 at 1781.073 kb on + strand, within Shewana3_1529 at 1781.123 kb on + strand, within Shewana3_1529 at 1781.339 kb on - strand at 1781.388 kb on + strand at 1781.400 kb on + strand at 1781.447 kb on + strand at 1781.496 kb on - strand at 1781.541 kb on + strand at 1781.541 kb on + strand at 1781.541 kb on + strand at 1781.549 kb on - strand at 1781.549 kb on - strand at 1781.549 kb on - strand at 1781.549 kb on - strand at 1781.549 kb on - strand at 1781.601 kb on + strand at 1781.609 kb on - strand at 1781.625 kb on + strand at 1781.648 kb on - strand at 1781.711 kb on - strand at 1781.779 kb on + strand, within Shewana3_1530 at 1782.481 kb on + strand, within Shewana3_1530 at 1782.575 kb on + strand, within Shewana3_1530 at 1782.866 kb on + strand at 1782.924 kb on - strand at 1782.986 kb on + strand, within Shewana3_1531 at 1783.258 kb on - strand, within Shewana3_1531 at 1783.343 kb on + strand, within Shewana3_1531 at 1783.343 kb on + strand, within Shewana3_1531 at 1783.351 kb on - strand, within Shewana3_1531 at 1783.351 kb on - strand, within Shewana3_1531 at 1783.374 kb on + strand, within Shewana3_1531 at 1783.527 kb on + strand, within Shewana3_1531 at 1783.541 kb on - strand, within Shewana3_1531 at 1783.557 kb on + strand, within Shewana3_1531 at 1783.570 kb on - strand, within Shewana3_1531
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,780,681 + Shewana3_1529 0.65 +0.8 1,780,754 - Shewana3_1529 0.68 +0.6 1,780,758 + Shewana3_1529 0.68 +0.1 1,780,821 - Shewana3_1529 0.71 +0.3 1,780,823 - Shewana3_1529 0.71 -0.1 1,781,052 - Shewana3_1529 0.80 +1.2 1,781,052 - Shewana3_1529 0.80 -0.4 1,781,073 + Shewana3_1529 0.81 +2.1 1,781,123 + Shewana3_1529 0.83 -1.8 1,781,339 - +0.8 1,781,388 + +0.3 1,781,400 + +0.6 1,781,447 + -1.1 1,781,496 - +0.4 1,781,541 + +0.3 1,781,541 + +1.2 1,781,541 + -0.9 1,781,549 - +0.9 1,781,549 - -0.9 1,781,549 - -0.0 1,781,549 - -1.4 1,781,549 - -1.1 1,781,601 + -0.8 1,781,609 - +0.9 1,781,625 + +0.1 1,781,648 - +0.3 1,781,711 - -0.5 1,781,779 + Shewana3_1530 0.11 -0.9 1,782,481 + Shewana3_1530 0.80 -2.6 1,782,575 + Shewana3_1530 0.90 -1.0 1,782,866 + -0.1 1,782,924 - +1.0 1,782,986 + Shewana3_1531 0.11 +1.0 1,783,258 - Shewana3_1531 0.37 +0.6 1,783,343 + Shewana3_1531 0.45 -0.9 1,783,343 + Shewana3_1531 0.45 +1.0 1,783,351 - Shewana3_1531 0.46 -0.3 1,783,351 - Shewana3_1531 0.46 +1.6 1,783,374 + Shewana3_1531 0.48 -0.2 1,783,527 + Shewana3_1531 0.63 -1.0 1,783,541 - Shewana3_1531 0.65 +0.2 1,783,557 + Shewana3_1531 0.66 -0.2 1,783,570 - Shewana3_1531 0.67 +0.6
Or see this region's nucleotide sequence