Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1490 and Shewana3_1491 are separated by 41 nucleotides Shewana3_1491 and Shewana3_1492 are separated by 221 nucleotides Shewana3_1492 and Shewana3_1493 are separated by 179 nucleotides
Shewana3_1490: Shewana3_1490 - phenylalanine/histidine ammonia-lyase (RefSeq), at 1,736,785 to 1,738,422
_1490
Shewana3_1491: Shewana3_1491 - tetraheme cytochrome c (RefSeq), at 1,738,464 to 1,738,847
_1491
Shewana3_1492: Shewana3_1492 - prolyl aminopeptidase 2 (RefSeq), at 1,739,069 to 1,740,358
_1492
Shewana3_1493: Shewana3_1493 - beta-lactamase domain-containing protein (RefSeq), at 1,740,538 to 1,741,182
_1493
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-2
-1
0
1 at 1738.326 kb on + strand at 1738.326 kb on + strand at 1739.102 kb on - strand at 1739.152 kb on + strand at 1739.212 kb on - strand, within Shewana3_1492 at 1739.296 kb on - strand, within Shewana3_1492 at 1739.463 kb on - strand, within Shewana3_1492 at 1739.465 kb on + strand, within Shewana3_1492 at 1739.808 kb on + strand, within Shewana3_1492 at 1740.040 kb on + strand, within Shewana3_1492 at 1740.088 kb on + strand, within Shewana3_1492 at 1740.088 kb on + strand, within Shewana3_1492 at 1740.125 kb on + strand, within Shewana3_1492 at 1740.240 kb on + strand at 1740.248 kb on - strand at 1740.374 kb on - strand at 1740.918 kb on + strand, within Shewana3_1493 at 1740.923 kb on + strand, within Shewana3_1493 at 1740.923 kb on + strand, within Shewana3_1493 at 1741.064 kb on + strand, within Shewana3_1493
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,738,326 + -0.2 1,738,326 + -0.8 1,739,102 - +0.4 1,739,152 + -0.7 1,739,212 - Shewana3_1492 0.11 -0.7 1,739,296 - Shewana3_1492 0.18 -0.0 1,739,463 - Shewana3_1492 0.31 -1.5 1,739,465 + Shewana3_1492 0.31 +0.2 1,739,808 + Shewana3_1492 0.57 +0.4 1,740,040 + Shewana3_1492 0.75 -1.2 1,740,088 + Shewana3_1492 0.79 -0.6 1,740,088 + Shewana3_1492 0.79 +0.2 1,740,125 + Shewana3_1492 0.82 -0.2 1,740,240 + +0.1 1,740,248 - +1.6 1,740,374 - +0.1 1,740,918 + Shewana3_1493 0.59 +0.9 1,740,923 + Shewana3_1493 0.60 -2.4 1,740,923 + Shewana3_1493 0.60 +0.9 1,741,064 + Shewana3_1493 0.82 -1.1
Or see this region's nucleotide sequence