Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1380

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1379 and Shewana3_1380 are separated by 70 nucleotidesShewana3_1380 and Shewana3_1381 are separated by 98 nucleotides Shewana3_1379: Shewana3_1379 - dTDP-glucose 4,6 dehydratase (RefSeq), at 1,594,422 to 1,595,501 _1379 Shewana3_1380: Shewana3_1380 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,595,572 to 1,596,432 _1380 Shewana3_1381: Shewana3_1381 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 1,596,531 to 1,597,406 _1381 Position (kb) 1595 1596 1597Strain fitness (log2 ratio) -2 -1 0 1at 1595.429 kb on + strandat 1595.429 kb on + strandat 1595.442 kb on + strandat 1595.460 kb on + strandat 1595.460 kb on + strandat 1595.470 kb on + strandat 1595.470 kb on + strandat 1595.470 kb on + strandat 1595.480 kb on + strandat 1595.480 kb on + strandat 1595.526 kb on + strandat 1596.446 kb on + strandat 1597.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,595,429 + +0.0
1,595,429 + +0.1
1,595,442 + -0.4
1,595,460 + -0.6
1,595,460 + -1.6
1,595,470 + -0.3
1,595,470 + -0.3
1,595,470 + +0.5
1,595,480 + +0.4
1,595,480 + +0.8
1,595,526 + +1.1
1,596,446 + +1.0
1,597,377 + -2.3

Or see this region's nucleotide sequence