Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1298 and Shewana3_1299 are separated by 0 nucleotides Shewana3_1299 and Shewana3_1300 are separated by 245 nucleotides Shewana3_1300 and Shewana3_1301 are separated by 105 nucleotides
Shewana3_1298: Shewana3_1298 - hypothetical protein (RefSeq), at 1,511,704 to 1,512,651
_1298
Shewana3_1299: Shewana3_1299 - hypothetical protein (RefSeq), at 1,512,652 to 1,513,212
_1299
Shewana3_1300: Shewana3_1300 - hypothetical protein (RefSeq), at 1,513,458 to 1,513,937
_1300
Shewana3_1301: Shewana3_1301 - hypothetical protein (RefSeq), at 1,514,043 to 1,516,514
_1301
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-1
0
1 at 1511.696 kb on + strand at 1511.808 kb on + strand, within Shewana3_1298 at 1511.909 kb on + strand, within Shewana3_1298 at 1512.037 kb on + strand, within Shewana3_1298 at 1512.050 kb on - strand, within Shewana3_1298 at 1512.192 kb on + strand, within Shewana3_1298 at 1512.200 kb on - strand, within Shewana3_1298 at 1512.200 kb on - strand, within Shewana3_1298 at 1512.202 kb on - strand, within Shewana3_1298 at 1512.844 kb on - strand, within Shewana3_1299 at 1512.962 kb on + strand, within Shewana3_1299 at 1513.029 kb on + strand, within Shewana3_1299 at 1513.136 kb on + strand, within Shewana3_1299 at 1513.338 kb on - strand at 1513.340 kb on + strand at 1513.660 kb on - strand, within Shewana3_1300 at 1513.747 kb on + strand, within Shewana3_1300 at 1513.859 kb on - strand, within Shewana3_1300 at 1513.919 kb on + strand at 1513.919 kb on + strand at 1513.927 kb on - strand at 1513.976 kb on + strand at 1513.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,511,696 + +0.9 1,511,808 + Shewana3_1298 0.11 +0.9 1,511,909 + Shewana3_1298 0.22 -0.4 1,512,037 + Shewana3_1298 0.35 +0.9 1,512,050 - Shewana3_1298 0.36 +1.7 1,512,192 + Shewana3_1298 0.51 +0.3 1,512,200 - Shewana3_1298 0.52 +1.0 1,512,200 - Shewana3_1298 0.52 +0.2 1,512,202 - Shewana3_1298 0.53 +1.3 1,512,844 - Shewana3_1299 0.34 +0.2 1,512,962 + Shewana3_1299 0.55 -0.0 1,513,029 + Shewana3_1299 0.67 +0.9 1,513,136 + Shewana3_1299 0.86 +0.8 1,513,338 - -0.2 1,513,340 + -0.4 1,513,660 - Shewana3_1300 0.42 -0.5 1,513,747 + Shewana3_1300 0.60 -0.5 1,513,859 - Shewana3_1300 0.84 -0.7 1,513,919 + -0.6 1,513,919 + +0.3 1,513,927 - -0.9 1,513,976 + +0.1 1,513,992 - +1.0
Or see this region's nucleotide sequence