Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1194

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1193 and Shewana3_1194 are separated by 221 nucleotidesShewana3_1194 and Shewana3_1195 are separated by 35 nucleotides Shewana3_1193: Shewana3_1193 - pyrroline-5-carboxylate reductase (RefSeq), at 1,400,185 to 1,401,003 _1193 Shewana3_1194: Shewana3_1194 - hypothetical protein (RefSeq), at 1,401,225 to 1,401,941 _1194 Shewana3_1195: Shewana3_1195 - pilus retraction ATPase PilT (RefSeq), at 1,401,977 to 1,403,014 _1195 Position (kb) 1401 1402Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1400.340 kb on + strand, within Shewana3_1193at 1400.553 kb on - strand, within Shewana3_1193at 1400.639 kb on - strand, within Shewana3_1193at 1400.661 kb on + strand, within Shewana3_1193at 1400.699 kb on + strandat 1400.699 kb on + strand, within Shewana3_1193at 1400.699 kb on + strand, within Shewana3_1193at 1400.720 kb on + strand, within Shewana3_1193at 1400.861 kb on - strand, within Shewana3_1193at 1400.921 kb on + strand, within Shewana3_1193at 1400.921 kb on + strand, within Shewana3_1193at 1400.998 kb on + strandat 1401.022 kb on + strandat 1401.022 kb on + strandat 1401.030 kb on - strandat 1401.130 kb on + strandat 1401.250 kb on + strandat 1401.314 kb on - strand, within Shewana3_1194at 1401.605 kb on - strand, within Shewana3_1194at 1401.730 kb on + strand, within Shewana3_1194at 1402.025 kb on + strandat 1402.025 kb on + strandat 1402.115 kb on + strand, within Shewana3_1195at 1402.123 kb on - strand, within Shewana3_1195at 1402.130 kb on - strand, within Shewana3_1195at 1402.135 kb on - strand, within Shewana3_1195at 1402.135 kb on - strand, within Shewana3_1195at 1402.135 kb on - strand, within Shewana3_1195at 1402.142 kb on - strand, within Shewana3_1195at 1402.201 kb on + strand, within Shewana3_1195at 1402.243 kb on - strand, within Shewana3_1195at 1402.527 kb on + strand, within Shewana3_1195at 1402.546 kb on - strand, within Shewana3_1195at 1402.726 kb on - strand, within Shewana3_1195at 1402.915 kb on + strandat 1402.934 kb on + strandat 1402.934 kb on + strandat 1402.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,400,340 + Shewana3_1193 0.19 -0.7
1,400,553 - Shewana3_1193 0.45 +0.7
1,400,639 - Shewana3_1193 0.55 +0.5
1,400,661 + Shewana3_1193 0.58 +0.9
1,400,699 + +0.2
1,400,699 + Shewana3_1193 0.63 +1.0
1,400,699 + Shewana3_1193 0.63 -0.3
1,400,720 + Shewana3_1193 0.65 +1.8
1,400,861 - Shewana3_1193 0.83 -0.1
1,400,921 + Shewana3_1193 0.90 +0.3
1,400,921 + Shewana3_1193 0.90 +1.3
1,400,998 + -0.4
1,401,022 + -0.3
1,401,022 + +0.1
1,401,030 - -0.0
1,401,130 + -1.6
1,401,250 + -0.8
1,401,314 - Shewana3_1194 0.12 -2.7
1,401,605 - Shewana3_1194 0.53 -2.0
1,401,730 + Shewana3_1194 0.70 -2.8
1,402,025 + -3.4
1,402,025 + +0.3
1,402,115 + Shewana3_1195 0.13 -0.4
1,402,123 - Shewana3_1195 0.14 +0.6
1,402,130 - Shewana3_1195 0.15 -0.1
1,402,135 - Shewana3_1195 0.15 +0.3
1,402,135 - Shewana3_1195 0.15 +0.5
1,402,135 - Shewana3_1195 0.15 +0.3
1,402,142 - Shewana3_1195 0.16 -0.0
1,402,201 + Shewana3_1195 0.22 -0.3
1,402,243 - Shewana3_1195 0.26 +0.0
1,402,527 + Shewana3_1195 0.53 +0.8
1,402,546 - Shewana3_1195 0.55 +0.6
1,402,726 - Shewana3_1195 0.72 +0.6
1,402,915 + -0.3
1,402,934 + +0.7
1,402,934 + +0.2
1,402,941 + +0.4

Or see this region's nucleotide sequence