Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1158

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1156 and Shewana3_1157 are separated by 315 nucleotidesShewana3_1157 and Shewana3_1158 are separated by 103 nucleotidesShewana3_1158 and Shewana3_1159 are separated by 128 nucleotides Shewana3_1156: Shewana3_1156 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,362,962 to 1,364,533 _1156 Shewana3_1157: Shewana3_1157 - hypothetical protein (RefSeq), at 1,364,849 to 1,365,073 _1157 Shewana3_1158: Shewana3_1158 - TetR family transcriptional regulator (RefSeq), at 1,365,177 to 1,365,758 _1158 Shewana3_1159: Shewana3_1159 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 1,365,887 to 1,366,954 _1159 Position (kb) 1365 1366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1364.180 kb on + strand, within Shewana3_1156at 1364.230 kb on - strand, within Shewana3_1156at 1364.230 kb on - strand, within Shewana3_1156at 1364.252 kb on + strand, within Shewana3_1156at 1364.260 kb on - strand, within Shewana3_1156at 1364.412 kb on - strandat 1364.783 kb on + strandat 1364.931 kb on - strand, within Shewana3_1157at 1365.004 kb on + strand, within Shewana3_1157at 1365.012 kb on - strand, within Shewana3_1157at 1365.058 kb on + strandat 1365.058 kb on + strandat 1365.066 kb on - strandat 1365.261 kb on - strand, within Shewana3_1158at 1365.323 kb on - strand, within Shewana3_1158at 1365.555 kb on - strand, within Shewana3_1158at 1365.555 kb on - strand, within Shewana3_1158at 1365.562 kb on + strand, within Shewana3_1158at 1365.562 kb on + strand, within Shewana3_1158at 1365.562 kb on + strand, within Shewana3_1158at 1365.726 kb on - strandat 1365.738 kb on + strandat 1365.744 kb on - strandat 1365.884 kb on - strandat 1365.890 kb on - strandat 1365.933 kb on - strandat 1365.994 kb on + strand, within Shewana3_1159at 1365.994 kb on + strand, within Shewana3_1159at 1366.036 kb on + strand, within Shewana3_1159at 1366.111 kb on - strand, within Shewana3_1159at 1366.159 kb on + strand, within Shewana3_1159at 1366.217 kb on + strand, within Shewana3_1159at 1366.257 kb on + strand, within Shewana3_1159at 1366.352 kb on - strand, within Shewana3_1159at 1366.352 kb on - strand, within Shewana3_1159at 1366.570 kb on + strand, within Shewana3_1159at 1366.688 kb on + strand, within Shewana3_1159

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
1,364,180 + Shewana3_1156 0.77 +0.3
1,364,230 - Shewana3_1156 0.81 +0.2
1,364,230 - Shewana3_1156 0.81 +0.3
1,364,252 + Shewana3_1156 0.82 +0.5
1,364,260 - Shewana3_1156 0.83 +0.3
1,364,412 - +0.4
1,364,783 + -0.6
1,364,931 - Shewana3_1157 0.36 -2.1
1,365,004 + Shewana3_1157 0.69 +0.9
1,365,012 - Shewana3_1157 0.72 +0.4
1,365,058 + +0.3
1,365,058 + -1.1
1,365,066 - +0.0
1,365,261 - Shewana3_1158 0.14 -1.2
1,365,323 - Shewana3_1158 0.25 -1.1
1,365,555 - Shewana3_1158 0.65 -2.4
1,365,555 - Shewana3_1158 0.65 -0.8
1,365,562 + Shewana3_1158 0.66 -0.0
1,365,562 + Shewana3_1158 0.66 -1.0
1,365,562 + Shewana3_1158 0.66 -1.2
1,365,726 - -0.3
1,365,738 + -1.9
1,365,744 - -4.2
1,365,884 - +0.9
1,365,890 - +0.1
1,365,933 - -0.8
1,365,994 + Shewana3_1159 0.10 +0.0
1,365,994 + Shewana3_1159 0.10 -0.3
1,366,036 + Shewana3_1159 0.14 +0.9
1,366,111 - Shewana3_1159 0.21 -1.9
1,366,159 + Shewana3_1159 0.25 -0.2
1,366,217 + Shewana3_1159 0.31 +0.9
1,366,257 + Shewana3_1159 0.35 -0.5
1,366,352 - Shewana3_1159 0.44 -0.3
1,366,352 - Shewana3_1159 0.44 +0.3
1,366,570 + Shewana3_1159 0.64 -0.9
1,366,688 + Shewana3_1159 0.75 -0.9

Or see this region's nucleotide sequence