Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1156 and Shewana3_1157 are separated by 315 nucleotides Shewana3_1157 and Shewana3_1158 are separated by 103 nucleotides Shewana3_1158 and Shewana3_1159 are separated by 128 nucleotides
Shewana3_1156: Shewana3_1156 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,362,962 to 1,364,533
_1156
Shewana3_1157: Shewana3_1157 - hypothetical protein (RefSeq), at 1,364,849 to 1,365,073
_1157
Shewana3_1158: Shewana3_1158 - TetR family transcriptional regulator (RefSeq), at 1,365,177 to 1,365,758
_1158
Shewana3_1159: Shewana3_1159 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 1,365,887 to 1,366,954
_1159
Position (kb)
1365
1366 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1364.180 kb on + strand, within Shewana3_1156 at 1364.230 kb on - strand, within Shewana3_1156 at 1364.230 kb on - strand, within Shewana3_1156 at 1364.252 kb on + strand, within Shewana3_1156 at 1364.260 kb on - strand, within Shewana3_1156 at 1364.412 kb on - strand at 1364.783 kb on + strand at 1364.931 kb on - strand, within Shewana3_1157 at 1365.004 kb on + strand, within Shewana3_1157 at 1365.012 kb on - strand, within Shewana3_1157 at 1365.058 kb on + strand at 1365.058 kb on + strand at 1365.066 kb on - strand at 1365.261 kb on - strand, within Shewana3_1158 at 1365.323 kb on - strand, within Shewana3_1158 at 1365.555 kb on - strand, within Shewana3_1158 at 1365.555 kb on - strand, within Shewana3_1158 at 1365.562 kb on + strand, within Shewana3_1158 at 1365.562 kb on + strand, within Shewana3_1158 at 1365.562 kb on + strand, within Shewana3_1158 at 1365.726 kb on - strand at 1365.738 kb on + strand at 1365.744 kb on - strand at 1365.884 kb on - strand at 1365.890 kb on - strand at 1365.933 kb on - strand at 1365.994 kb on + strand, within Shewana3_1159 at 1365.994 kb on + strand, within Shewana3_1159 at 1366.036 kb on + strand, within Shewana3_1159 at 1366.111 kb on - strand, within Shewana3_1159 at 1366.159 kb on + strand, within Shewana3_1159 at 1366.217 kb on + strand, within Shewana3_1159 at 1366.257 kb on + strand, within Shewana3_1159 at 1366.352 kb on - strand, within Shewana3_1159 at 1366.352 kb on - strand, within Shewana3_1159 at 1366.570 kb on + strand, within Shewana3_1159 at 1366.688 kb on + strand, within Shewana3_1159
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,364,180 + Shewana3_1156 0.77 +0.3 1,364,230 - Shewana3_1156 0.81 +0.2 1,364,230 - Shewana3_1156 0.81 +0.3 1,364,252 + Shewana3_1156 0.82 +0.5 1,364,260 - Shewana3_1156 0.83 +0.3 1,364,412 - +0.4 1,364,783 + -0.6 1,364,931 - Shewana3_1157 0.36 -2.1 1,365,004 + Shewana3_1157 0.69 +0.9 1,365,012 - Shewana3_1157 0.72 +0.4 1,365,058 + +0.3 1,365,058 + -1.1 1,365,066 - +0.0 1,365,261 - Shewana3_1158 0.14 -1.2 1,365,323 - Shewana3_1158 0.25 -1.1 1,365,555 - Shewana3_1158 0.65 -2.4 1,365,555 - Shewana3_1158 0.65 -0.8 1,365,562 + Shewana3_1158 0.66 -0.0 1,365,562 + Shewana3_1158 0.66 -1.0 1,365,562 + Shewana3_1158 0.66 -1.2 1,365,726 - -0.3 1,365,738 + -1.9 1,365,744 - -4.2 1,365,884 - +0.9 1,365,890 - +0.1 1,365,933 - -0.8 1,365,994 + Shewana3_1159 0.10 +0.0 1,365,994 + Shewana3_1159 0.10 -0.3 1,366,036 + Shewana3_1159 0.14 +0.9 1,366,111 - Shewana3_1159 0.21 -1.9 1,366,159 + Shewana3_1159 0.25 -0.2 1,366,217 + Shewana3_1159 0.31 +0.9 1,366,257 + Shewana3_1159 0.35 -0.5 1,366,352 - Shewana3_1159 0.44 -0.3 1,366,352 - Shewana3_1159 0.44 +0.3 1,366,570 + Shewana3_1159 0.64 -0.9 1,366,688 + Shewana3_1159 0.75 -0.9
Or see this region's nucleotide sequence