Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1115

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmazG and pyrG are separated by 116 nucleotidespyrG and eno are separated by 213 nucleotides Shewana3_1114: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 1,312,902 to 1,313,780 mazG Shewana3_1115: pyrG - CTP synthetase (RefSeq), at 1,313,897 to 1,315,537 pyrG Shewana3_1116: eno - phosphopyruvate hydratase (RefSeq), at 1,315,751 to 1,317,046 eno Position (kb) 1313 1314 1315 1316Strain fitness (log2 ratio) -1 0 1at 1313.176 kb on - strand, within mazGat 1313.265 kb on - strand, within mazGat 1313.457 kb on + strand, within mazGat 1313.457 kb on + strand, within mazGat 1313.611 kb on + strand, within mazGat 1313.725 kb on + strandat 1313.733 kb on - strandat 1313.733 kb on - strandat 1313.755 kb on + strandat 1313.755 kb on + strandat 1315.744 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,313,176 - mazG Shewana3_1114 0.31 +1.6
1,313,265 - mazG Shewana3_1114 0.41 -0.2
1,313,457 + mazG Shewana3_1114 0.63 -1.4
1,313,457 + mazG Shewana3_1114 0.63 +1.0
1,313,611 + mazG Shewana3_1114 0.81 -0.3
1,313,725 + -0.6
1,313,733 - -0.1
1,313,733 - -0.2
1,313,755 + -0.8
1,313,755 + +0.5
1,315,744 + +0.8

Or see this region's nucleotide sequence