Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1005

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1004 and Shewana3_1005 are separated by 42 nucleotidesShewana3_1005 and Shewana3_1006 are separated by 39 nucleotidesShewana3_1006 and Shewana3_1007 overlap by 11 nucleotides Shewana3_1004: Shewana3_1004 - apolipoprotein N-acyltransferase (RefSeq), at 1,174,223 to 1,175,773 _1004 Shewana3_1005: Shewana3_1005 - CBS domain-containing protein (RefSeq), at 1,175,816 to 1,176,691 _1005 Shewana3_1006: Shewana3_1006 - putative metalloprotease (RefSeq), at 1,176,731 to 1,177,192 _1006 Shewana3_1007: Shewana3_1007 - PhoH family protein (RefSeq), at 1,177,182 to 1,178,246 _1007 Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1175.864 kb on - strandat 1176.104 kb on - strand, within Shewana3_1005at 1176.175 kb on - strand, within Shewana3_1005at 1176.175 kb on - strand, within Shewana3_1005at 1176.714 kb on - strandat 1176.714 kb on - strandat 1176.714 kb on - strandat 1177.321 kb on - strand, within Shewana3_1007at 1177.321 kb on - strand, within Shewana3_1007at 1177.321 kb on - strand, within Shewana3_1007at 1177.672 kb on - strand, within Shewana3_1007

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,175,864 - -0.1
1,176,104 - Shewana3_1005 0.33 +0.0
1,176,175 - Shewana3_1005 0.41 -4.6
1,176,175 - Shewana3_1005 0.41 -2.4
1,176,714 - -0.7
1,176,714 - -0.2
1,176,714 - +0.8
1,177,321 - Shewana3_1007 0.13 +1.2
1,177,321 - Shewana3_1007 0.13 +0.4
1,177,321 - Shewana3_1007 0.13 +1.4
1,177,672 - Shewana3_1007 0.46 +0.7

Or see this region's nucleotide sequence