Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0367 and Shewana3_0368 overlap by 4 nucleotides Shewana3_0368 and Shewana3_0369 are separated by 59 nucleotides Shewana3_0369 and Shewana3_0370 are separated by 94 nucleotides Shewana3_0370 and Shewana3_0371 are separated by 116 nucleotides
Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211
_0367
Shewana3_0368: Shewana3_0368 - hypothetical protein (RefSeq), at 405,208 to 405,573
_0368
Shewana3_0369: Shewana3_0369 - hypothetical protein (RefSeq), at 405,633 to 405,965
_0369
Shewana3_0370: Shewana3_0370 - hypothetical protein (RefSeq), at 406,060 to 406,314
_0370
Shewana3_0371: Shewana3_0371 - acriflavin resistance protein (RefSeq), at 406,431 to 409,520
_0371
Position (kb) 406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.317 kb on + strand, within Shewana3_0368 at 405.339 kb on - strand, within Shewana3_0368 at 405.509 kb on + strand, within Shewana3_0368 at 405.638 kb on + strand at 405.818 kb on - strand, within Shewana3_0369 at 405.848 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.917 kb on + strand, within Shewana3_0369 at 405.927 kb on + strand, within Shewana3_0369 at 405.935 kb on - strand at 405.935 kb on - strand at 406.187 kb on - strand, within Shewana3_0370 at 406.258 kb on + strand, within Shewana3_0370 at 406.266 kb on - strand, within Shewana3_0370 at 406.702 kb on + strand at 406.702 kb on + strand at 406.979 kb on - strand, within Shewana3_0371 at 407.029 kb on + strand, within Shewana3_0371 at 407.037 kb on - strand, within Shewana3_0371 at 407.281 kb on - strand, within Shewana3_0371 at 407.288 kb on + strand, within Shewana3_0371 at 407.304 kb on + strand, within Shewana3_0371
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 405,317 + Shewana3_0368 0.30 +0.8 405,339 - Shewana3_0368 0.36 -1.9 405,509 + Shewana3_0368 0.82 +0.3 405,638 + -1.0 405,818 - Shewana3_0369 0.56 +1.0 405,848 - Shewana3_0369 0.65 -0.9 405,895 - Shewana3_0369 0.79 +0.9 405,895 - Shewana3_0369 0.79 +0.5 405,917 + Shewana3_0369 0.85 -0.5 405,927 + Shewana3_0369 0.88 +0.4 405,935 - -0.1 405,935 - +0.6 406,187 - Shewana3_0370 0.50 +2.4 406,258 + Shewana3_0370 0.78 -0.6 406,266 - Shewana3_0370 0.81 -1.1 406,702 + +0.5 406,702 + +0.9 406,979 - Shewana3_0371 0.18 -0.8 407,029 + Shewana3_0371 0.19 +0.4 407,037 - Shewana3_0371 0.20 -1.0 407,281 - Shewana3_0371 0.28 +0.5 407,288 + Shewana3_0371 0.28 +0.4 407,304 + Shewana3_0371 0.28 +0.3
Or see this region's nucleotide sequence