Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0358 and Shewana3_0359 are separated by 1 nucleotides Shewana3_0359 and Shewana3_0360 are separated by 142 nucleotides
Shewana3_0358: Shewana3_0358 - dihydroxy-acid dehydratase (RefSeq), at 394,196 to 396,055
_0358
Shewana3_0359: Shewana3_0359 - threonine dehydratase (RefSeq), at 396,057 to 397,700
_0359
Shewana3_0360: Shewana3_0360 - alanine-glyoxylate aminotransferase (RefSeq), at 397,843 to 398,976
_0360
Position (kb) 396
397
398 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 395.094 kb on + strand, within Shewana3_0358 at 395.128 kb on + strand, within Shewana3_0358 at 395.136 kb on - strand, within Shewana3_0358 at 395.168 kb on + strand, within Shewana3_0358 at 395.215 kb on - strand, within Shewana3_0358 at 395.272 kb on + strand, within Shewana3_0358 at 395.293 kb on + strand, within Shewana3_0358 at 395.301 kb on - strand, within Shewana3_0358 at 395.378 kb on + strand, within Shewana3_0358 at 395.417 kb on + strand, within Shewana3_0358 at 395.424 kb on + strand, within Shewana3_0358 at 395.573 kb on + strand, within Shewana3_0358 at 395.725 kb on - strand, within Shewana3_0358 at 395.730 kb on - strand, within Shewana3_0358 at 395.827 kb on - strand, within Shewana3_0358 at 395.868 kb on + strand, within Shewana3_0358 at 395.874 kb on + strand at 395.882 kb on - strand at 395.900 kb on + strand at 396.089 kb on + strand at 396.089 kb on + strand at 396.097 kb on - strand at 396.186 kb on + strand at 396.293 kb on - strand, within Shewana3_0359 at 396.420 kb on - strand, within Shewana3_0359 at 396.429 kb on - strand, within Shewana3_0359 at 396.522 kb on - strand, within Shewana3_0359 at 396.649 kb on + strand, within Shewana3_0359 at 396.649 kb on + strand, within Shewana3_0359 at 396.864 kb on - strand, within Shewana3_0359 at 397.490 kb on - strand, within Shewana3_0359 at 397.503 kb on - strand, within Shewana3_0359 at 397.544 kb on - strand at 397.610 kb on + strand at 397.610 kb on + strand at 397.734 kb on - strand at 397.752 kb on - strand at 397.778 kb on + strand at 397.828 kb on + strand at 398.284 kb on - strand, within Shewana3_0360 at 398.294 kb on + strand, within Shewana3_0360 at 398.380 kb on + strand, within Shewana3_0360 at 398.390 kb on - strand, within Shewana3_0360 at 398.567 kb on - strand, within Shewana3_0360
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 395,094 + Shewana3_0358 0.48 -2.8 395,128 + Shewana3_0358 0.50 -3.4 395,136 - Shewana3_0358 0.51 -3.7 395,168 + Shewana3_0358 0.52 -1.3 395,215 - Shewana3_0358 0.55 -2.7 395,272 + Shewana3_0358 0.58 -4.1 395,293 + Shewana3_0358 0.59 -3.6 395,301 - Shewana3_0358 0.59 -4.2 395,378 + Shewana3_0358 0.64 -3.8 395,417 + Shewana3_0358 0.66 -5.4 395,424 + Shewana3_0358 0.66 -3.9 395,573 + Shewana3_0358 0.74 -5.1 395,725 - Shewana3_0358 0.82 -2.0 395,730 - Shewana3_0358 0.82 -2.1 395,827 - Shewana3_0358 0.88 -4.2 395,868 + Shewana3_0358 0.90 -4.0 395,874 + -1.0 395,882 - -4.2 395,900 + -3.2 396,089 + -4.0 396,089 + -3.5 396,097 - -2.8 396,186 + -1.8 396,293 - Shewana3_0359 0.14 -2.4 396,420 - Shewana3_0359 0.22 -4.5 396,429 - Shewana3_0359 0.23 -1.6 396,522 - Shewana3_0359 0.28 -1.8 396,649 + Shewana3_0359 0.36 -4.0 396,649 + Shewana3_0359 0.36 -1.9 396,864 - Shewana3_0359 0.49 -3.3 397,490 - Shewana3_0359 0.87 -2.4 397,503 - Shewana3_0359 0.88 -3.4 397,544 - -1.5 397,610 + -2.4 397,610 + -0.8 397,734 - +0.1 397,752 - -1.1 397,778 + +0.9 397,828 + +0.2 398,284 - Shewana3_0360 0.39 -0.1 398,294 + Shewana3_0360 0.40 +0.1 398,380 + Shewana3_0360 0.47 +0.3 398,390 - Shewana3_0360 0.48 +0.4 398,567 - Shewana3_0360 0.64 +0.2
Or see this region's nucleotide sequence