Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0141 and Shewana3_0142 are separated by 263 nucleotides Shewana3_0142 and Shewana3_0143 are separated by 459 nucleotides Shewana3_0143 and Shewana3_0144 are separated by 82 nucleotides
Shewana3_0141: Shewana3_0141 - hypothetical protein (RefSeq), at 161,725 to 162,843
_0141
Shewana3_0142: Shewana3_0142 - sodium:dicarboxylate symporter (RefSeq), at 163,107 to 164,336
_0142
Shewana3_0143: Shewana3_0143 - hypothetical protein (RefSeq), at 164,796 to 165,149
_0143
Shewana3_0144: Shewana3_0144 - hypothetical protein (RefSeq), at 165,232 to 166,965
_0144
Position (kb)
163
164
165 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 162.327 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.526 kb on - strand, within Shewana3_0141 at 162.589 kb on + strand, within Shewana3_0141 at 162.855 kb on + strand at 162.863 kb on - strand at 162.863 kb on - strand at 162.863 kb on - strand at 162.874 kb on - strand at 162.955 kb on + strand at 162.959 kb on + strand at 162.960 kb on + strand at 163.037 kb on + strand at 163.073 kb on + strand at 163.214 kb on - strand at 163.366 kb on + strand, within Shewana3_0142 at 163.374 kb on - strand, within Shewana3_0142 at 163.456 kb on - strand, within Shewana3_0142 at 163.532 kb on - strand, within Shewana3_0142 at 163.690 kb on - strand, within Shewana3_0142 at 163.754 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.831 kb on + strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.839 kb on - strand, within Shewana3_0142 at 163.842 kb on + strand, within Shewana3_0142 at 163.850 kb on - strand, within Shewana3_0142 at 163.942 kb on - strand, within Shewana3_0142 at 163.958 kb on + strand, within Shewana3_0142 at 163.959 kb on - strand, within Shewana3_0142 at 164.016 kb on + strand, within Shewana3_0142 at 164.138 kb on + strand, within Shewana3_0142 at 164.642 kb on + strand at 164.842 kb on + strand, within Shewana3_0143 at 165.003 kb on - strand, within Shewana3_0143 at 165.080 kb on + strand, within Shewana3_0143 at 165.206 kb on + strand at 165.223 kb on + strand at 165.230 kb on - strand at 165.237 kb on - strand at 165.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 162,327 + Shewana3_0141 0.54 -0.1 162,426 + Shewana3_0141 0.63 -0.6 162,426 + Shewana3_0141 0.63 -3.0 162,426 + Shewana3_0141 0.63 +0.8 162,434 - Shewana3_0141 0.63 +0.4 162,434 - Shewana3_0141 0.63 -0.3 162,526 - Shewana3_0141 0.72 +0.2 162,589 + Shewana3_0141 0.77 -0.1 162,855 + +0.3 162,863 - +1.2 162,863 - +0.7 162,863 - -1.1 162,874 - -0.4 162,955 + -0.8 162,959 + +0.7 162,960 + -1.7 163,037 + -1.5 163,073 + +0.4 163,214 - -0.1 163,366 + Shewana3_0142 0.21 +0.5 163,374 - Shewana3_0142 0.22 +0.3 163,456 - Shewana3_0142 0.28 +1.0 163,532 - Shewana3_0142 0.35 -0.5 163,690 - Shewana3_0142 0.47 -0.4 163,754 + Shewana3_0142 0.53 -1.2 163,831 + Shewana3_0142 0.59 -0.0 163,831 + Shewana3_0142 0.59 +0.6 163,831 + Shewana3_0142 0.59 +0.9 163,839 - Shewana3_0142 0.60 -2.2 163,839 - Shewana3_0142 0.60 +0.5 163,839 - Shewana3_0142 0.60 +1.8 163,842 + Shewana3_0142 0.60 -0.9 163,850 - Shewana3_0142 0.60 +0.3 163,942 - Shewana3_0142 0.68 -0.2 163,958 + Shewana3_0142 0.69 +0.9 163,959 - Shewana3_0142 0.69 +0.1 164,016 + Shewana3_0142 0.74 -0.1 164,138 + Shewana3_0142 0.84 +0.4 164,642 + +0.2 164,842 + Shewana3_0143 0.13 -1.1 165,003 - Shewana3_0143 0.58 -3.1 165,080 + Shewana3_0143 0.80 -0.0 165,206 + -0.4 165,223 + -0.2 165,230 - +1.0 165,237 - +0.0 165,272 - -0.9
Or see this region's nucleotide sequence