Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0142

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0141 and Shewana3_0142 are separated by 263 nucleotidesShewana3_0142 and Shewana3_0143 are separated by 459 nucleotidesShewana3_0143 and Shewana3_0144 are separated by 82 nucleotides Shewana3_0141: Shewana3_0141 - hypothetical protein (RefSeq), at 161,725 to 162,843 _0141 Shewana3_0142: Shewana3_0142 - sodium:dicarboxylate symporter (RefSeq), at 163,107 to 164,336 _0142 Shewana3_0143: Shewana3_0143 - hypothetical protein (RefSeq), at 164,796 to 165,149 _0143 Shewana3_0144: Shewana3_0144 - hypothetical protein (RefSeq), at 165,232 to 166,965 _0144 Position (kb) 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 162.327 kb on + strand, within Shewana3_0141at 162.426 kb on + strand, within Shewana3_0141at 162.426 kb on + strand, within Shewana3_0141at 162.426 kb on + strand, within Shewana3_0141at 162.434 kb on - strand, within Shewana3_0141at 162.434 kb on - strand, within Shewana3_0141at 162.526 kb on - strand, within Shewana3_0141at 162.589 kb on + strand, within Shewana3_0141at 162.855 kb on + strandat 162.863 kb on - strandat 162.863 kb on - strandat 162.863 kb on - strandat 162.874 kb on - strandat 162.955 kb on + strandat 162.959 kb on + strandat 162.960 kb on + strandat 163.037 kb on + strandat 163.073 kb on + strandat 163.214 kb on - strandat 163.366 kb on + strand, within Shewana3_0142at 163.374 kb on - strand, within Shewana3_0142at 163.456 kb on - strand, within Shewana3_0142at 163.532 kb on - strand, within Shewana3_0142at 163.690 kb on - strand, within Shewana3_0142at 163.754 kb on + strand, within Shewana3_0142at 163.831 kb on + strand, within Shewana3_0142at 163.831 kb on + strand, within Shewana3_0142at 163.831 kb on + strand, within Shewana3_0142at 163.839 kb on - strand, within Shewana3_0142at 163.839 kb on - strand, within Shewana3_0142at 163.839 kb on - strand, within Shewana3_0142at 163.842 kb on + strand, within Shewana3_0142at 163.850 kb on - strand, within Shewana3_0142at 163.942 kb on - strand, within Shewana3_0142at 163.958 kb on + strand, within Shewana3_0142at 163.959 kb on - strand, within Shewana3_0142at 164.016 kb on + strand, within Shewana3_0142at 164.138 kb on + strand, within Shewana3_0142at 164.642 kb on + strandat 164.842 kb on + strand, within Shewana3_0143at 165.003 kb on - strand, within Shewana3_0143at 165.080 kb on + strand, within Shewana3_0143at 165.206 kb on + strandat 165.223 kb on + strandat 165.230 kb on - strandat 165.237 kb on - strandat 165.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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162,327 + Shewana3_0141 0.54 -0.1
162,426 + Shewana3_0141 0.63 -0.6
162,426 + Shewana3_0141 0.63 -3.0
162,426 + Shewana3_0141 0.63 +0.8
162,434 - Shewana3_0141 0.63 +0.4
162,434 - Shewana3_0141 0.63 -0.3
162,526 - Shewana3_0141 0.72 +0.2
162,589 + Shewana3_0141 0.77 -0.1
162,855 + +0.3
162,863 - +1.2
162,863 - +0.7
162,863 - -1.1
162,874 - -0.4
162,955 + -0.8
162,959 + +0.7
162,960 + -1.7
163,037 + -1.5
163,073 + +0.4
163,214 - -0.1
163,366 + Shewana3_0142 0.21 +0.5
163,374 - Shewana3_0142 0.22 +0.3
163,456 - Shewana3_0142 0.28 +1.0
163,532 - Shewana3_0142 0.35 -0.5
163,690 - Shewana3_0142 0.47 -0.4
163,754 + Shewana3_0142 0.53 -1.2
163,831 + Shewana3_0142 0.59 -0.0
163,831 + Shewana3_0142 0.59 +0.6
163,831 + Shewana3_0142 0.59 +0.9
163,839 - Shewana3_0142 0.60 -2.2
163,839 - Shewana3_0142 0.60 +0.5
163,839 - Shewana3_0142 0.60 +1.8
163,842 + Shewana3_0142 0.60 -0.9
163,850 - Shewana3_0142 0.60 +0.3
163,942 - Shewana3_0142 0.68 -0.2
163,958 + Shewana3_0142 0.69 +0.9
163,959 - Shewana3_0142 0.69 +0.1
164,016 + Shewana3_0142 0.74 -0.1
164,138 + Shewana3_0142 0.84 +0.4
164,642 + +0.2
164,842 + Shewana3_0143 0.13 -1.1
165,003 - Shewana3_0143 0.58 -3.1
165,080 + Shewana3_0143 0.80 -0.0
165,206 + -0.4
165,223 + -0.2
165,230 - +1.0
165,237 - +0.0
165,272 - -0.9

Or see this region's nucleotide sequence