Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0092

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0091 and Shewana3_0092 are separated by 242 nucleotidesShewana3_0092 and Shewana3_0093 are separated by 29 nucleotidesShewana3_0093 and Shewana3_0094 are separated by 43 nucleotides Shewana3_0091: Shewana3_0091 - hypothetical protein (RefSeq), at 102,105 to 103,118 _0091 Shewana3_0092: Shewana3_0092 - integrase catalytic subunit (RefSeq), at 103,361 to 104,164 _0092 Shewana3_0093: Shewana3_0093 - transposase (RefSeq), at 104,194 to 104,589 _0093 Shewana3_0094: Shewana3_0094 - hypothetical protein (RefSeq), at 104,633 to 105,280 _0094 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1at 102.503 kb on + strand, within Shewana3_0091at 102.510 kb on - strand, within Shewana3_0091at 102.545 kb on + strand, within Shewana3_0091at 102.545 kb on + strand, within Shewana3_0091at 102.553 kb on + strand, within Shewana3_0091at 102.642 kb on - strand, within Shewana3_0091at 102.744 kb on + strand, within Shewana3_0091at 102.752 kb on - strand, within Shewana3_0091at 102.752 kb on - strand, within Shewana3_0091at 102.791 kb on + strand, within Shewana3_0091at 102.810 kb on - strand, within Shewana3_0091at 102.811 kb on - strand, within Shewana3_0091at 102.829 kb on + strand, within Shewana3_0091at 102.837 kb on + strand, within Shewana3_0091at 102.903 kb on + strand, within Shewana3_0091at 102.911 kb on - strand, within Shewana3_0091at 103.056 kb on + strandat 103.149 kb on - strandat 103.176 kb on - strandat 103.176 kb on - strandat 103.189 kb on + strandat 103.212 kb on + strandat 103.270 kb on + strandat 103.328 kb on + strandat 103.851 kb on - strand, within Shewana3_0092at 104.385 kb on - strand, within Shewana3_0093at 104.783 kb on - strand, within Shewana3_0094at 104.792 kb on + strand, within Shewana3_0094at 104.843 kb on + strand, within Shewana3_0094at 105.130 kb on - strand, within Shewana3_0094

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
102,503 + Shewana3_0091 0.39 +0.8
102,510 - Shewana3_0091 0.40 -1.1
102,545 + Shewana3_0091 0.43 +0.0
102,545 + Shewana3_0091 0.43 +0.3
102,553 + Shewana3_0091 0.44 -1.0
102,642 - Shewana3_0091 0.53 +0.6
102,744 + Shewana3_0091 0.63 -1.1
102,752 - Shewana3_0091 0.64 -0.1
102,752 - Shewana3_0091 0.64 +0.6
102,791 + Shewana3_0091 0.68 -0.8
102,810 - Shewana3_0091 0.70 -0.6
102,811 - Shewana3_0091 0.70 -1.6
102,829 + Shewana3_0091 0.71 -0.7
102,837 + Shewana3_0091 0.72 +0.1
102,903 + Shewana3_0091 0.79 -0.3
102,911 - Shewana3_0091 0.79 +0.2
103,056 + -0.3
103,149 - +0.8
103,176 - +1.4
103,176 - -0.1
103,189 + +0.1
103,212 + -0.0
103,270 + +0.3
103,328 + +0.6
103,851 - Shewana3_0092 0.61 -1.2
104,385 - Shewana3_0093 0.48 -1.8
104,783 - Shewana3_0094 0.23 -0.6
104,792 + Shewana3_0094 0.25 -0.0
104,843 + Shewana3_0094 0.32 -0.7
105,130 - Shewana3_0094 0.77 -0.8

Or see this region's nucleotide sequence