Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4363 and Shewana3_4364 are separated by 200 nucleotides Shewana3_4364 and Shewana3_4365 are separated by 191 nucleotides
Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246
_4363
Shewana3_4364: Shewana3_4364 - manganese and iron superoxide dismutase (RefSeq), at 252,447 to 253,058
_4364
Shewana3_4365: Shewana3_4365 - chromate transporter (RefSeq), at 253,250 to 254,617
_4365
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 251.802 kb on - strand, within Shewana3_4363 at 252.015 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.022 kb on - strand at 252.480 kb on - strand at 252.545 kb on + strand, within Shewana3_4364 at 252.604 kb on - strand, within Shewana3_4364 at 252.704 kb on - strand, within Shewana3_4364 at 253.035 kb on - strand at 253.077 kb on - strand at 253.395 kb on - strand, within Shewana3_4365 at 253.733 kb on - strand, within Shewana3_4365 at 253.777 kb on - strand, within Shewana3_4365 at 253.887 kb on + strand, within Shewana3_4365 at 253.892 kb on + strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 254.045 kb on - strand, within Shewana3_4365
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 251,802 - Shewana3_4363 0.85 -0.2 252,015 - -2.5 252,022 - -0.7 252,022 - -0.4 252,022 - +0.3 252,480 - -0.2 252,545 + Shewana3_4364 0.16 -0.5 252,604 - Shewana3_4364 0.26 -1.4 252,704 - Shewana3_4364 0.42 -1.5 253,035 - +0.4 253,077 - -1.4 253,395 - Shewana3_4365 0.11 +0.2 253,733 - Shewana3_4365 0.35 -0.0 253,777 - Shewana3_4365 0.39 -0.5 253,887 + Shewana3_4365 0.47 +0.2 253,892 + Shewana3_4365 0.47 -1.6 253,895 - Shewana3_4365 0.47 -1.4 253,895 - Shewana3_4365 0.47 -0.4 254,045 - Shewana3_4365 0.58 +0.4
Or see this region's nucleotide sequence