Strain Fitness in Shewanella loihica PV-4 around Shew_1676

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1675 and Shew_1676 are separated by 213 nucleotidesShew_1676 and Shew_1677 are separated by 154 nucleotides Shew_1675: Shew_1675 - peptidase S9 prolyl oligopeptidase (RefSeq), at 1,924,089 to 1,926,140 _1675 Shew_1676: Shew_1676 - ABC transporter-related protein (RefSeq), at 1,926,354 to 1,927,949 _1676 Shew_1677: Shew_1677 - leucyl aminopeptidase (RefSeq), at 1,928,104 to 1,929,465 _1677 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -1 0 1 2at 1925.469 kb on + strand, within Shew_1675at 1925.821 kb on - strand, within Shew_1675at 1926.011 kb on + strandat 1926.144 kb on - strandat 1927.041 kb on - strand, within Shew_1676at 1928.230 kb on - strandat 1928.432 kb on + strand, within Shew_1677at 1928.539 kb on - strand, within Shew_1677at 1928.843 kb on + strand, within Shew_1677

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,925,469 + Shew_1675 0.67 +0.2
1,925,821 - Shew_1675 0.84 -0.8
1,926,011 + -0.7
1,926,144 - +0.3
1,927,041 - Shew_1676 0.43 +1.9
1,928,230 - -0.7
1,928,432 + Shew_1677 0.24 +0.7
1,928,539 - Shew_1677 0.32 +0.3
1,928,843 + Shew_1677 0.54 +1.7

Or see this region's nucleotide sequence