Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabG and Shew_1674 are separated by 113 nucleotides Shew_1674 and Shew_1675 are separated by 9 nucleotides Shew_1675 and Shew_1676 are separated by 213 nucleotides
Shew_1673: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 1,922,950 to 1,923,708
fabG
Shew_1674: Shew_1674 - hypothetical protein (RefSeq), at 1,923,822 to 1,924,079
_1674
Shew_1675: Shew_1675 - peptidase S9 prolyl oligopeptidase (RefSeq), at 1,924,089 to 1,926,140
_1675
Shew_1676: Shew_1676 - ABC transporter-related protein (RefSeq), at 1,926,354 to 1,927,949
_1676
Position (kb) 1924
1925
1926
1927 Strain fitness (log2 ratio) -1
0
1
2 at 1923.385 kb on - strand, within fabG at 1923.400 kb on - strand, within fabG at 1924.267 kb on - strand at 1924.585 kb on - strand, within Shew_1675 at 1925.329 kb on + strand, within Shew_1675 at 1925.337 kb on - strand, within Shew_1675 at 1925.469 kb on + strand, within Shew_1675 at 1925.821 kb on - strand, within Shew_1675 at 1926.011 kb on + strand at 1926.144 kb on - strand at 1927.041 kb on - strand, within Shew_1676
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 1,923,385 - fabG Shew_1673 0.57 +0.4 1,923,400 - fabG Shew_1673 0.59 +0.2 1,924,267 - +0.0 1,924,585 - Shew_1675 0.24 -0.0 1,925,329 + Shew_1675 0.60 +0.6 1,925,337 - Shew_1675 0.61 -0.3 1,925,469 + Shew_1675 0.67 +0.2 1,925,821 - Shew_1675 0.84 -0.8 1,926,011 + -0.7 1,926,144 - +0.3 1,927,041 - Shew_1676 0.43 +1.9
Or see this region's nucleotide sequence