Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0702 and Shew_0703 are separated by 183 nucleotides Shew_0703 and Shew_0704 are separated by 186 nucleotides Shew_0704 and Shew_0705 are separated by 304 nucleotides
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Shew_0703: Shew_0703 - response regulator receiver protein (RefSeq), at 798,050 to 798,412
_0703
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Shew_0705: Shew_0705 - hypothetical protein (RefSeq), at 799,500 to 800,441
_0705
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1 at 797.677 kb on - strand, within Shew_0702 at 797.849 kb on - strand at 797.955 kb on + strand at 797.963 kb on - strand at 797.963 kb on - strand at 798.134 kb on - strand, within Shew_0703 at 798.162 kb on + strand, within Shew_0703 at 798.251 kb on + strand, within Shew_0703 at 798.373 kb on + strand, within Shew_0703 at 798.435 kb on + strand at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.433 kb on + strand at 799.433 kb on + strand at 799.530 kb on - strand at 799.546 kb on + strand at 799.855 kb on - strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.944 kb on - strand, within Shew_0705 at 800.062 kb on + strand, within Shew_0705
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 797,677 - Shew_0702 0.82 +0.8 797,849 - -0.0 797,955 + +0.7 797,963 - -0.3 797,963 - -0.1 798,134 - Shew_0703 0.23 -1.9 798,162 + Shew_0703 0.31 -0.1 798,251 + Shew_0703 0.55 +0.1 798,373 + Shew_0703 0.89 -0.3 798,435 + +0.1 798,503 + +0.2 798,526 + -0.0 798,677 + Shew_0704 0.13 +0.1 798,701 - Shew_0704 0.17 -0.3 798,861 - Shew_0704 0.44 -0.1 799,040 - Shew_0704 0.74 -0.1 799,040 - Shew_0704 0.74 -0.4 799,433 + -1.1 799,433 + +0.3 799,530 - +1.3 799,546 + -0.0 799,855 - Shew_0705 0.38 -0.0 799,936 + Shew_0705 0.46 +0.8 799,936 + Shew_0705 0.46 -0.4 799,936 + Shew_0705 0.46 +0.3 799,936 + Shew_0705 0.46 -1.3 799,944 - Shew_0705 0.47 -0.6 800,062 + Shew_0705 0.60 -0.1
Or see this region's nucleotide sequence