Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0628 and Shew_0629 are separated by 47 nucleotides Shew_0629 and Shew_0630 are separated by 2 nucleotides Shew_0630 and Shew_0631 are separated by 3 nucleotides
Shew_0628: Shew_0628 - (glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 713,023 to 715,893
_0628
Shew_0629: Shew_0629 - extracellular solute-binding protein (RefSeq), at 715,941 to 716,714
_0629
Shew_0630: Shew_0630 - hypothetical protein (RefSeq), at 716,717 to 717,529
_0630
Shew_0631: Shew_0631 - AFG1 family ATPase (RefSeq), at 717,533 to 718,699
_0631
Position (kb) 716
717
718 Strain fitness (log2 ratio) -1
0
1 at 715.739 kb on - strand at 715.785 kb on + strand at 715.837 kb on - strand at 716.227 kb on + strand, within Shew_0629 at 716.353 kb on + strand, within Shew_0629 at 716.353 kb on + strand, within Shew_0629 at 716.353 kb on + strand, within Shew_0629 at 716.361 kb on - strand, within Shew_0629 at 716.361 kb on - strand, within Shew_0629 at 716.361 kb on - strand, within Shew_0629 at 716.380 kb on - strand, within Shew_0629 at 716.464 kb on + strand, within Shew_0629 at 716.648 kb on + strand at 717.235 kb on + strand, within Shew_0630 at 717.271 kb on + strand, within Shew_0630 at 717.492 kb on - strand at 717.531 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.644 kb on - strand at 717.644 kb on - strand at 718.228 kb on + strand, within Shew_0631 at 718.323 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 715,739 - +1.4 715,785 + -0.7 715,837 - +1.0 716,227 + Shew_0629 0.37 -0.1 716,353 + Shew_0629 0.53 -0.2 716,353 + Shew_0629 0.53 -0.8 716,353 + Shew_0629 0.53 +0.1 716,361 - Shew_0629 0.54 -0.2 716,361 - Shew_0629 0.54 -0.6 716,361 - Shew_0629 0.54 +0.1 716,380 - Shew_0629 0.57 +0.1 716,464 + Shew_0629 0.68 -0.2 716,648 + -0.3 717,235 + Shew_0630 0.64 -1.3 717,271 + Shew_0630 0.68 +0.4 717,492 - -0.1 717,531 + +0.2 717,636 + +0.1 717,636 + +0.3 717,636 + -0.2 717,644 - +0.2 717,644 - +0.6 718,228 + Shew_0631 0.60 -0.3 718,323 + Shew_0631 0.68 -0.2 718,383 + Shew_0631 0.73 +0.0 718,383 + Shew_0631 0.73 +0.1
Or see this region's nucleotide sequence