Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and cyaA are separated by 185 nucleotides cyaA and Shew_0320 are separated by 7 nucleotides Shew_0320 and Shew_0321 are separated by 489 nucleotides
Shew_0318: hemC - porphobilinogen deaminase (RefSeq), at 363,663 to 364,616
hemC
Shew_0319: cyaA - adenylate cyclase (RefSeq), at 364,802 to 367,222
cyaA
Shew_0320: Shew_0320 - frataxin family protein (RefSeq), at 367,230 to 367,604
_0320
Shew_0321: Shew_0321 - hypothetical protein (RefSeq), at 368,094 to 368,261
_0321
Position (kb) 364
365
366
367
368 Strain fitness (log2 ratio) -1
0
1 at 364.765 kb on + strand at 365.033 kb on - strand at 365.042 kb on + strand at 365.196 kb on + strand, within cyaA at 365.297 kb on + strand, within cyaA at 365.317 kb on - strand, within cyaA at 365.458 kb on - strand, within cyaA at 365.510 kb on + strand, within cyaA at 365.510 kb on + strand, within cyaA at 365.518 kb on - strand, within cyaA at 365.829 kb on - strand, within cyaA at 365.855 kb on - strand, within cyaA at 365.855 kb on - strand, within cyaA at 366.124 kb on + strand, within cyaA at 366.132 kb on - strand, within cyaA at 366.222 kb on + strand, within cyaA at 366.356 kb on - strand, within cyaA at 366.595 kb on + strand, within cyaA at 366.603 kb on - strand, within cyaA at 367.053 kb on + strand at 367.262 kb on + strand at 367.262 kb on + strand at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.313 kb on - strand, within Shew_0320 at 367.413 kb on - strand, within Shew_0320
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 364,765 + -0.6 365,033 - -0.1 365,042 + -0.3 365,196 + cyaA Shew_0319 0.16 -0.2 365,297 + cyaA Shew_0319 0.20 -0.1 365,317 - cyaA Shew_0319 0.21 -0.5 365,458 - cyaA Shew_0319 0.27 -0.2 365,510 + cyaA Shew_0319 0.29 -0.1 365,510 + cyaA Shew_0319 0.29 -0.3 365,518 - cyaA Shew_0319 0.30 -0.2 365,829 - cyaA Shew_0319 0.42 +0.1 365,855 - cyaA Shew_0319 0.43 -0.1 365,855 - cyaA Shew_0319 0.43 -1.1 366,124 + cyaA Shew_0319 0.55 +0.6 366,132 - cyaA Shew_0319 0.55 -0.6 366,222 + cyaA Shew_0319 0.59 -1.2 366,356 - cyaA Shew_0319 0.64 +0.0 366,595 + cyaA Shew_0319 0.74 -0.2 366,603 - cyaA Shew_0319 0.74 -0.8 367,053 + -0.0 367,262 + -0.2 367,262 + +0.7 367,270 - Shew_0320 0.11 -0.1 367,270 - Shew_0320 0.11 -1.6 367,270 - Shew_0320 0.11 +0.1 367,313 - Shew_0320 0.22 +0.2 367,413 - Shew_0320 0.49 -0.5
Or see this region's nucleotide sequence