Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaK3 and tRNA-Ser are separated by 128 nucleotides tRNA-Ser and petF are separated by 93 nucleotides petF and impA are separated by 3 nucleotides impA and Synpcc7942_2583 are separated by 87 nucleotides
Synpcc7942_2580: dnaK3 - Heat shock protein Hsp70, at 2,664,460 to 2,666,709
dnaK3
Synpcc7942_R0023: tRNA-Ser - tRNA-Ser, at 2,666,838 to 2,666,924
tRNA-Ser
Synpcc7942_2581: petF - Ferredoxin (2Fe-2S), at 2,667,018 to 2,667,386
petF
Synpcc7942_2582: impA - myo-inositol-1(or 4)-monophosphatase, at 2,667,390 to 2,668,211
impA
Synpcc7942_2583: Synpcc7942_2583 - hypothetical protein, at 2,668,299 to 2,668,931
_2583
Position (kb)
2667
2668 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2666.703 kb on + strand at 2666.769 kb on + strand at 2666.785 kb on - strand at 2666.801 kb on - strand at 2666.987 kb on - strand at 2667.034 kb on - strand at 2667.034 kb on - strand at 2667.380 kb on + strand at 2667.380 kb on + strand at 2667.414 kb on + strand at 2667.422 kb on - strand at 2667.460 kb on + strand at 2667.487 kb on + strand, within impA at 2667.530 kb on + strand, within impA at 2667.579 kb on + strand, within impA at 2667.586 kb on + strand, within impA at 2667.586 kb on + strand, within impA at 2667.586 kb on + strand, within impA at 2667.589 kb on - strand, within impA at 2667.594 kb on - strand, within impA at 2667.594 kb on - strand, within impA at 2667.594 kb on - strand, within impA at 2667.647 kb on + strand, within impA at 2667.647 kb on + strand, within impA at 2667.661 kb on + strand, within impA at 2667.692 kb on + strand at 2667.692 kb on + strand, within impA at 2667.730 kb on + strand, within impA at 2667.733 kb on - strand, within impA at 2667.738 kb on - strand, within impA at 2667.764 kb on + strand, within impA at 2667.777 kb on + strand at 2667.777 kb on + strand, within impA at 2667.792 kb on + strand, within impA at 2667.792 kb on + strand, within impA at 2667.792 kb on + strand, within impA at 2667.810 kb on + strand, within impA at 2667.818 kb on - strand, within impA at 2667.831 kb on - strand, within impA at 2667.900 kb on + strand, within impA at 2667.900 kb on + strand, within impA at 2667.905 kb on + strand, within impA at 2667.906 kb on + strand, within impA at 2667.908 kb on - strand, within impA at 2667.908 kb on - strand, within impA at 2667.908 kb on - strand, within impA at 2667.908 kb on - strand, within impA at 2667.919 kb on - strand, within impA at 2667.923 kb on + strand, within impA at 2667.923 kb on + strand, within impA at 2667.944 kb on + strand, within impA at 2667.946 kb on + strand, within impA at 2667.952 kb on + strand, within impA at 2667.952 kb on - strand, within impA at 2667.960 kb on - strand, within impA at 2667.968 kb on + strand, within impA at 2667.981 kb on + strand, within impA at 2667.989 kb on - strand, within impA at 2668.004 kb on - strand, within impA at 2668.015 kb on + strand, within impA at 2668.015 kb on + strand, within impA at 2668.025 kb on + strand, within impA at 2668.042 kb on + strand, within impA at 2668.054 kb on + strand, within impA at 2668.054 kb on + strand, within impA at 2668.059 kb on + strand, within impA at 2668.059 kb on + strand, within impA at 2668.085 kb on + strand, within impA at 2668.154 kb on + strand at 2668.154 kb on + strand at 2668.154 kb on + strand at 2668.157 kb on - strand at 2668.172 kb on - strand at 2668.172 kb on - strand at 2668.187 kb on + strand at 2668.208 kb on + strand at 2668.218 kb on - strand at 2668.218 kb on - strand at 2668.236 kb on + strand at 2668.251 kb on + strand at 2668.266 kb on - strand at 2668.268 kb on - strand at 2668.291 kb on + strand at 2668.298 kb on - strand at 2668.299 kb on - strand at 2668.320 kb on + strand at 2668.329 kb on + strand at 2668.331 kb on + strand at 2668.331 kb on + strand at 2668.352 kb on + strand at 2668.352 kb on + strand at 2668.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 2,666,703 + -3.0 2,666,769 + +1.4 2,666,785 - +0.1 2,666,801 - +1.4 2,666,987 - +0.8 2,667,034 - -2.3 2,667,034 - -0.6 2,667,380 + +0.3 2,667,380 + -2.0 2,667,414 + -1.1 2,667,422 - -1.0 2,667,460 + -3.4 2,667,487 + impA Synpcc7942_2582 0.12 -0.6 2,667,530 + impA Synpcc7942_2582 0.17 +0.7 2,667,579 + impA Synpcc7942_2582 0.23 +2.3 2,667,586 + impA Synpcc7942_2582 0.24 -0.9 2,667,586 + impA Synpcc7942_2582 0.24 +1.2 2,667,586 + impA Synpcc7942_2582 0.24 +0.9 2,667,589 - impA Synpcc7942_2582 0.24 -3.0 2,667,594 - impA Synpcc7942_2582 0.25 -0.9 2,667,594 - impA Synpcc7942_2582 0.25 -0.0 2,667,594 - impA Synpcc7942_2582 0.25 -0.6 2,667,647 + impA Synpcc7942_2582 0.31 +0.4 2,667,647 + impA Synpcc7942_2582 0.31 -0.7 2,667,661 + impA Synpcc7942_2582 0.33 -3.0 2,667,692 + -0.1 2,667,692 + impA Synpcc7942_2582 0.37 +0.3 2,667,730 + impA Synpcc7942_2582 0.41 -0.2 2,667,733 - impA Synpcc7942_2582 0.42 -0.1 2,667,738 - impA Synpcc7942_2582 0.42 +1.1 2,667,764 + impA Synpcc7942_2582 0.45 +0.3 2,667,777 + -0.4 2,667,777 + impA Synpcc7942_2582 0.47 -0.0 2,667,792 + impA Synpcc7942_2582 0.49 -1.0 2,667,792 + impA Synpcc7942_2582 0.49 +0.5 2,667,792 + impA Synpcc7942_2582 0.49 -0.1 2,667,810 + impA Synpcc7942_2582 0.51 -0.2 2,667,818 - impA Synpcc7942_2582 0.52 -3.8 2,667,831 - impA Synpcc7942_2582 0.54 +0.3 2,667,900 + impA Synpcc7942_2582 0.62 -1.1 2,667,900 + impA Synpcc7942_2582 0.62 +0.7 2,667,905 + impA Synpcc7942_2582 0.63 -2.9 2,667,906 + impA Synpcc7942_2582 0.63 -0.5 2,667,908 - impA Synpcc7942_2582 0.63 -3.4 2,667,908 - impA Synpcc7942_2582 0.63 +0.2 2,667,908 - impA Synpcc7942_2582 0.63 -2.1 2,667,908 - impA Synpcc7942_2582 0.63 -0.6 2,667,919 - impA Synpcc7942_2582 0.64 -0.2 2,667,923 + impA Synpcc7942_2582 0.65 +1.0 2,667,923 + impA Synpcc7942_2582 0.65 +0.4 2,667,944 + impA Synpcc7942_2582 0.67 -0.6 2,667,946 + impA Synpcc7942_2582 0.68 -3.8 2,667,952 + impA Synpcc7942_2582 0.68 -3.5 2,667,952 - impA Synpcc7942_2582 0.68 +0.3 2,667,960 - impA Synpcc7942_2582 0.69 +0.1 2,667,968 + impA Synpcc7942_2582 0.70 -0.6 2,667,981 + impA Synpcc7942_2582 0.72 -0.3 2,667,989 - impA Synpcc7942_2582 0.73 +0.2 2,668,004 - impA Synpcc7942_2582 0.75 -2.3 2,668,015 + impA Synpcc7942_2582 0.76 -1.8 2,668,015 + impA Synpcc7942_2582 0.76 +0.7 2,668,025 + impA Synpcc7942_2582 0.77 -0.6 2,668,042 + impA Synpcc7942_2582 0.79 -0.2 2,668,054 + impA Synpcc7942_2582 0.81 -1.1 2,668,054 + impA Synpcc7942_2582 0.81 -1.1 2,668,059 + impA Synpcc7942_2582 0.81 -3.0 2,668,059 + impA Synpcc7942_2582 0.81 -1.9 2,668,085 + impA Synpcc7942_2582 0.85 -0.1 2,668,154 + -0.5 2,668,154 + -1.1 2,668,154 + -2.0 2,668,157 - -1.9 2,668,172 - -0.5 2,668,172 - +1.0 2,668,187 + +0.8 2,668,208 + -1.6 2,668,218 - +0.1 2,668,218 - +1.4 2,668,236 + +0.5 2,668,251 + +1.3 2,668,266 - -1.1 2,668,268 - -0.0 2,668,291 + +0.8 2,668,298 - -0.6 2,668,299 - +1.9 2,668,320 + +0.6 2,668,329 + -4.6 2,668,331 + -2.6 2,668,331 + -1.2 2,668,352 + -2.8 2,668,352 + -1.1 2,668,360 - -2.1
Or see this region's nucleotide sequence