Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2581

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaK3 and tRNA-Ser are separated by 128 nucleotidestRNA-Ser and petF are separated by 93 nucleotidespetF and impA are separated by 3 nucleotidesimpA and Synpcc7942_2583 are separated by 87 nucleotides Synpcc7942_2580: dnaK3 - Heat shock protein Hsp70, at 2,664,460 to 2,666,709 dnaK3 Synpcc7942_R0023: tRNA-Ser - tRNA-Ser, at 2,666,838 to 2,666,924 tRNA-Ser Synpcc7942_2581: petF - Ferredoxin (2Fe-2S), at 2,667,018 to 2,667,386 petF Synpcc7942_2582: impA - myo-inositol-1(or 4)-monophosphatase, at 2,667,390 to 2,668,211 impA Synpcc7942_2583: Synpcc7942_2583 - hypothetical protein, at 2,668,299 to 2,668,931 _2583 Position (kb) 2667 2668Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2666.703 kb on + strandat 2666.769 kb on + strandat 2666.785 kb on - strandat 2666.801 kb on - strandat 2666.987 kb on - strandat 2667.034 kb on - strandat 2667.034 kb on - strandat 2667.380 kb on + strandat 2667.380 kb on + strandat 2667.414 kb on + strandat 2667.422 kb on - strandat 2667.460 kb on + strandat 2667.487 kb on + strand, within impAat 2667.530 kb on + strand, within impAat 2667.579 kb on + strand, within impAat 2667.586 kb on + strand, within impAat 2667.586 kb on + strand, within impAat 2667.586 kb on + strand, within impAat 2667.589 kb on - strand, within impAat 2667.594 kb on - strand, within impAat 2667.594 kb on - strand, within impAat 2667.594 kb on - strand, within impAat 2667.647 kb on + strand, within impAat 2667.647 kb on + strand, within impAat 2667.661 kb on + strand, within impAat 2667.692 kb on + strandat 2667.692 kb on + strand, within impAat 2667.730 kb on + strand, within impAat 2667.733 kb on - strand, within impAat 2667.738 kb on - strand, within impAat 2667.764 kb on + strand, within impAat 2667.777 kb on + strandat 2667.777 kb on + strand, within impAat 2667.792 kb on + strand, within impAat 2667.792 kb on + strand, within impAat 2667.792 kb on + strand, within impAat 2667.810 kb on + strand, within impAat 2667.818 kb on - strand, within impAat 2667.831 kb on - strand, within impAat 2667.900 kb on + strand, within impAat 2667.900 kb on + strand, within impAat 2667.905 kb on + strand, within impAat 2667.906 kb on + strand, within impAat 2667.908 kb on - strand, within impAat 2667.908 kb on - strand, within impAat 2667.908 kb on - strand, within impAat 2667.908 kb on - strand, within impAat 2667.919 kb on - strand, within impAat 2667.923 kb on + strand, within impAat 2667.923 kb on + strand, within impAat 2667.944 kb on + strand, within impAat 2667.946 kb on + strand, within impAat 2667.952 kb on + strand, within impAat 2667.952 kb on - strand, within impAat 2667.960 kb on - strand, within impAat 2667.968 kb on + strand, within impAat 2667.981 kb on + strand, within impAat 2667.989 kb on - strand, within impAat 2668.004 kb on - strand, within impAat 2668.015 kb on + strand, within impAat 2668.015 kb on + strand, within impAat 2668.025 kb on + strand, within impAat 2668.042 kb on + strand, within impAat 2668.054 kb on + strand, within impAat 2668.054 kb on + strand, within impAat 2668.059 kb on + strand, within impAat 2668.059 kb on + strand, within impAat 2668.085 kb on + strand, within impAat 2668.154 kb on + strandat 2668.154 kb on + strandat 2668.154 kb on + strandat 2668.157 kb on - strandat 2668.172 kb on - strandat 2668.172 kb on - strandat 2668.187 kb on + strandat 2668.208 kb on + strandat 2668.218 kb on - strandat 2668.218 kb on - strandat 2668.236 kb on + strandat 2668.251 kb on + strandat 2668.266 kb on - strandat 2668.268 kb on - strandat 2668.291 kb on + strandat 2668.298 kb on - strandat 2668.299 kb on - strandat 2668.320 kb on + strandat 2668.329 kb on + strandat 2668.331 kb on + strandat 2668.331 kb on + strandat 2668.352 kb on + strandat 2668.352 kb on + strandat 2668.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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2,666,703 + -3.0
2,666,769 + +1.4
2,666,785 - +0.1
2,666,801 - +1.4
2,666,987 - +0.8
2,667,034 - -2.3
2,667,034 - -0.6
2,667,380 + +0.3
2,667,380 + -2.0
2,667,414 + -1.1
2,667,422 - -1.0
2,667,460 + -3.4
2,667,487 + impA Synpcc7942_2582 0.12 -0.6
2,667,530 + impA Synpcc7942_2582 0.17 +0.7
2,667,579 + impA Synpcc7942_2582 0.23 +2.3
2,667,586 + impA Synpcc7942_2582 0.24 -0.9
2,667,586 + impA Synpcc7942_2582 0.24 +1.2
2,667,586 + impA Synpcc7942_2582 0.24 +0.9
2,667,589 - impA Synpcc7942_2582 0.24 -3.0
2,667,594 - impA Synpcc7942_2582 0.25 -0.9
2,667,594 - impA Synpcc7942_2582 0.25 -0.0
2,667,594 - impA Synpcc7942_2582 0.25 -0.6
2,667,647 + impA Synpcc7942_2582 0.31 +0.4
2,667,647 + impA Synpcc7942_2582 0.31 -0.7
2,667,661 + impA Synpcc7942_2582 0.33 -3.0
2,667,692 + -0.1
2,667,692 + impA Synpcc7942_2582 0.37 +0.3
2,667,730 + impA Synpcc7942_2582 0.41 -0.2
2,667,733 - impA Synpcc7942_2582 0.42 -0.1
2,667,738 - impA Synpcc7942_2582 0.42 +1.1
2,667,764 + impA Synpcc7942_2582 0.45 +0.3
2,667,777 + -0.4
2,667,777 + impA Synpcc7942_2582 0.47 -0.0
2,667,792 + impA Synpcc7942_2582 0.49 -1.0
2,667,792 + impA Synpcc7942_2582 0.49 +0.5
2,667,792 + impA Synpcc7942_2582 0.49 -0.1
2,667,810 + impA Synpcc7942_2582 0.51 -0.2
2,667,818 - impA Synpcc7942_2582 0.52 -3.8
2,667,831 - impA Synpcc7942_2582 0.54 +0.3
2,667,900 + impA Synpcc7942_2582 0.62 -1.1
2,667,900 + impA Synpcc7942_2582 0.62 +0.7
2,667,905 + impA Synpcc7942_2582 0.63 -2.9
2,667,906 + impA Synpcc7942_2582 0.63 -0.5
2,667,908 - impA Synpcc7942_2582 0.63 -3.4
2,667,908 - impA Synpcc7942_2582 0.63 +0.2
2,667,908 - impA Synpcc7942_2582 0.63 -2.1
2,667,908 - impA Synpcc7942_2582 0.63 -0.6
2,667,919 - impA Synpcc7942_2582 0.64 -0.2
2,667,923 + impA Synpcc7942_2582 0.65 +1.0
2,667,923 + impA Synpcc7942_2582 0.65 +0.4
2,667,944 + impA Synpcc7942_2582 0.67 -0.6
2,667,946 + impA Synpcc7942_2582 0.68 -3.8
2,667,952 + impA Synpcc7942_2582 0.68 -3.5
2,667,952 - impA Synpcc7942_2582 0.68 +0.3
2,667,960 - impA Synpcc7942_2582 0.69 +0.1
2,667,968 + impA Synpcc7942_2582 0.70 -0.6
2,667,981 + impA Synpcc7942_2582 0.72 -0.3
2,667,989 - impA Synpcc7942_2582 0.73 +0.2
2,668,004 - impA Synpcc7942_2582 0.75 -2.3
2,668,015 + impA Synpcc7942_2582 0.76 -1.8
2,668,015 + impA Synpcc7942_2582 0.76 +0.7
2,668,025 + impA Synpcc7942_2582 0.77 -0.6
2,668,042 + impA Synpcc7942_2582 0.79 -0.2
2,668,054 + impA Synpcc7942_2582 0.81 -1.1
2,668,054 + impA Synpcc7942_2582 0.81 -1.1
2,668,059 + impA Synpcc7942_2582 0.81 -3.0
2,668,059 + impA Synpcc7942_2582 0.81 -1.9
2,668,085 + impA Synpcc7942_2582 0.85 -0.1
2,668,154 + -0.5
2,668,154 + -1.1
2,668,154 + -2.0
2,668,157 - -1.9
2,668,172 - -0.5
2,668,172 - +1.0
2,668,187 + +0.8
2,668,208 + -1.6
2,668,218 - +0.1
2,668,218 - +1.4
2,668,236 + +0.5
2,668,251 + +1.3
2,668,266 - -1.1
2,668,268 - -0.0
2,668,291 + +0.8
2,668,298 - -0.6
2,668,299 - +1.9
2,668,320 + +0.6
2,668,329 + -4.6
2,668,331 + -2.6
2,668,331 + -1.2
2,668,352 + -2.8
2,668,352 + -1.1
2,668,360 - -2.1

Or see this region's nucleotide sequence